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dpeerlab
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Palantir
Single cell trajectory detection
https://palantir.readthedocs.io
GNU General Public License v2.0
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Update `run_magic_imputation` to make setting small values to 0 optional
#153
jordanc17
closed
1 day ago
1
ZeroDivisionError when running select_branch_cells
#152
jam8924
closed
1 week ago
2
Are diffusion components used in visualizations?
#151
miloAhn
closed
1 week ago
1
Problem when running plot_trajectory with FDL
#150
miloAhn
closed
1 week ago
5
Entropy is 0 in every cell
#149
wbrett87
closed
3 months ago
1
gene_trend plot
#148
yitengfei120011
opened
3 months ago
1
Why is ms_data empty?
#147
st4302
closed
4 months ago
5
Multiple root cells possible?
#146
TdzBAS
opened
4 months ago
2
def select_branch_cells( ):
#145
yitengfei120011
opened
4 months ago
1
Similarity Kernel Computation
#144
Merlin2333
closed
4 months ago
1
"ValueError: Length of values does not match length of index"
#143
schroeme
closed
5 months ago
6
Diffusion Component Loadings
#142
wbrett87
closed
5 months ago
3
Gene expression trends
#141
DAOl44732
closed
6 months ago
11
Problem with importing the library
#140
HeleneHemmer
closed
6 months ago
5
ZeroDivisionError: integer division or modulo by zero
#139
simonekats
closed
7 months ago
2
KeyError: 'branch_masks not found in ad.obsm'
#138
simonekats
closed
6 months ago
5
No agreeing fate names found for .obsm['palantir_fate_probabilities'] and .obsm['branch_masks'].
#137
wangjiawen2013
closed
7 months ago
2
ImportError: cannot import name 'config' from 'jax.config' (/home/william/mambaforge/envs/palantir/lib/python3.12/site-packages/jax/config.py)
#136
wbrett87
closed
9 months ago
3
About the number of eigenvectors
#135
yuntianzhishang
closed
8 months ago
2
Adjust x-axis for pseudotime gene expression plots
#134
andrewsong777
closed
9 months ago
3
Multithreading issue with palantir.utils.run_magic_imputation()
#133
gighuarhguggg45
opened
9 months ago
8
Cannot install and run Palantir on Jupyter notebook
#132
andrewsong777
closed
9 months ago
3
plot_gene_trend
#131
yitengfei120011
closed
10 months ago
10
Error while running plot_palantir_results
#130
Yansr3
closed
10 months ago
3
`AttributeError: 'AnnData' object has no attribute 'values'` in the tutorial notebook `Palantir_sample_notebook.ipynb`
#129
danli349
closed
10 months ago
2
how to choose “start_cell”
#128
noob000007
closed
10 months ago
2
branch probabilities don't equal to 1
#127
wangjiawen2013
closed
11 months ago
3
AttributeError: module 'palantir.plot' has no attribute 'plot_trajectory'
#126
noob000007
closed
1 year ago
2
palantier + py3.7+ typing loading error
#125
dxl3742
closed
1 year ago
1
type KeyError with new v1.3.1: output from determine_multiscale_space
#124
zktuong
closed
1 year ago
6
drop `tables` dependency
#123
katosh
closed
1 year ago
0
installation issue
#122
haircell
closed
1 year ago
5
how to compare with other algorithm(monocle,TSCAN)？
#121
handesome
closed
1 year ago
4
Refactor run_diffusion_maps
#120
katosh
closed
1 year ago
0
Scanpy Integration Not Working with 1.3.0
#119
dgodovich
closed
1 year ago
2
Error while running plot_gene_trends
#118
ryanhchung
closed
9 months ago
3
findfont: Font family ['Raleway'] not found. Falling back to DejaVu Sans.
#117
zhouzhendiao
closed
1 year ago
2
implement palantir.plot.plot_stats
#116
katosh
closed
1 year ago
0
Runtime error during import of Palantir
#115
16nikita
closed
1 year ago
6
Using sparse GP for gene trends
#114
katosh
closed
1 year ago
0
Error while running run_magic_imputation
#113
aditisk
opened
1 year ago
2
remove custom fonts and seaborn
#112
katosh
closed
1 year ago
0
Seaborn
#111
ManuSetty
closed
1 year ago
1
palantir don't find values inside anndata
#110
rdesantis90
closed
1 year ago
2
Gene trend plot and fixes
#109
katosh
closed
1 year ago
0
IndexError in run_diffusion_maps
#108
shneyour
closed
1 year ago
2
Mellon density serialization
#107
katosh
closed
1 year ago
0
Palantir v1.2
#106
katosh
closed
1 year ago
0
finding start cell and findfont error
#105
Donovan-Correa
closed
1 year ago
7
Is it possible to run palantir on batch corrected data?
#104
jesswhitts
closed
1 year ago
2
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