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dpeerlab
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Palantir
Single cell trajectory detection
https://palantir.readthedocs.io
GNU General Public License v2.0
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palantir.preprocess.log_transform(ad) error
#99
sailseem
closed
1 year ago
3
compute_gene_trends throws ValueError: X data must not contain Inf nor NaN
#98
widsquid
closed
1 year ago
45
Terminal states is hard to understand
#97
liaoshengguang
closed
1 year ago
4
Do we need to do MAGIC imputation?
#96
st4302
closed
1 year ago
1
Error in palantir.plot.plot_diffusion_components(umap, dm_res)
#95
st4302
closed
1 year ago
1
Error in pca_projections
#94
sneupane04
closed
1 year ago
1
input data and imputation
#93
wangjiawen2013
closed
1 year ago
1
start cell and pseudotime
#92
wangjiawen2013
closed
1 year ago
1
NotImplementedError: adding a nonzero scalar to a sparse matrix is not supported
#91
wbrett87
closed
1 year ago
3
Branching probabilities do not reach 1
#90
ktpolanski
closed
1 year ago
6
Dev branch
#89
katosh
closed
1 year ago
2
Un-privatize gam_fit_predict, add parameters for splines
#88
christinedien
closed
1 year ago
0
Unable to reproduce code from Palantir_sample_notebook.ipynb
#87
spriyansh
closed
1 year ago
7
added seed option
#86
sdomanskyi
closed
1 year ago
1
obtaining unscaled pseudotime
#85
khanthanan
closed
1 year ago
4
Error "at least one array or dtype is required" when running run_palantir
#84
emanuelavilla
closed
1 year ago
5
Use a Cell Type cluster and not a name of cell to run Palantir
#83
emanuelavilla
closed
1 year ago
3
Issue with gene expression trends
#82
Kristina1234444
closed
1 year ago
7
🐛 Adapt log_transform
#81
mbuttner
closed
2 years ago
0
An error happend with “palantir.preprocess.log_transform ” function, and with error message "Adding a nonzero scalar to a sparse matrix is not supported
#80
zyb1984
closed
2 years ago
3
Palantir results
#79
ernohanninen
closed
2 years ago
3
pypi updates
#78
wangjiawen2013
closed
2 years ago
4
difference b/w index and start_cell / error when getting gene_trends
#77
kxxxjo
closed
1 year ago
4
V1.1.0
#76
ManuSetty
closed
2 years ago
0
Error while running preprocess.log_transform()
#75
kxxxjo
closed
2 years ago
6
About palantir automatically determining terminal state
#74
galaxyeee
closed
2 years ago
2
plot style
#73
wangjiawen2013
closed
2 years ago
2
Merging into v1.0.1
#72
ManuSetty
closed
2 years ago
0
TypeError: unsupported operand type(s) for +: 'memoryview' and 'float'
#71
galaxyeee
closed
2 years ago
2
FindFont No Image
#70
Keyan719
closed
2 years ago
2
could not broadcast input array
#69
wangjiawen2013
closed
2 years ago
2
save the results
#68
wangjiawen2013
closed
2 years ago
1
Failing to run `compute_gene_trends`
#67
GreenGilad
closed
2 years ago
2
Make MulticoreTSNE optional
#66
mrland99
closed
2 years ago
2
Computing the neighborhood graph error
#65
noobugs
closed
1 year ago
1
Palantir results not exactly reproducible
#64
Marius1311
closed
1 year ago
4
MulticoreTSNE
#63
gokceneraslan
closed
2 years ago
7
How to plot pr_res result in scanpy? Or how to export right embedding from adata to palantir.plot.plot_palantir_results
#62
Roger-GOAT
closed
3 years ago
2
how to find the number? start_cell = 'Run5_164698952452459
#61
Roger-GOAT
closed
3 years ago
5
Tutorial .h5ad file
#60
nkanrar
closed
2 years ago
2
Stability of palantir results
#59
dawe
closed
3 years ago
5
sns.set in Palantir conflicts with scanpy heatmap + marker tree plot function
#58
YubinXie
closed
3 years ago
1
About running Palantir using cisTopic object
#57
nigred
closed
3 years ago
1
ValueError: Bin edges must be unique:
#56
brianpenghe
closed
3 years ago
1
Font issue and no plot result in scanpy
#55
YubinXie
closed
3 years ago
1
Gene expression trends plot could we have a COLORBAR?
#54
sruthi-hub
closed
3 years ago
2
palantir.presults.PResults.load error
#53
YubinXie
closed
3 years ago
2
Error running 'sce.tl.palantir(adata)'
#52
sruthi-hub
closed
3 years ago
2
Value error: Did not find adata.var['highly_variable'] when it is actually present
#51
sruthi-hub
closed
3 years ago
2
Installation problem: failed building wheel for llvmlite
#50
sruthi-hub
closed
3 years ago
4
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