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dpeerlab
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Palantir
Single cell trajectory detection
https://palantir.readthedocs.io
GNU General Public License v2.0
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Segmentation fault when running "run_palantir"
#49
jamrute
closed
3 years ago
8
Error in palantir.utils.run_magic_imputation
#48
carloelle
closed
3 years ago
2
Adding colorbar to plot_gene_expression
#47
mcfefa
closed
4 years ago
2
PhenoGraph multi-processing error
#46
team-tomato-salad
closed
3 years ago
3
PackageNotInstalledError: The R package "gam" is not installed.
#45
zmokhtari
closed
4 years ago
2
Issue42
#44
ManuSetty
closed
4 years ago
0
Fix for issue 41
#43
ManuSetty
closed
4 years ago
1
Update tutorial
#42
ManuSetty
closed
4 years ago
1
Update access of neighbor distances from Anndata
#41
ManuSetty
closed
4 years ago
1
publication cell types
#40
igordot
closed
4 years ago
6
palantir.utils.determine_multiscale_space returns 0 columns
#39
csy99
closed
3 years ago
1
Bug computing gene expression trends
#38
davisidarta
closed
4 years ago
2
cannot install Palantir
#37
csy99
closed
4 years ago
2
can I transfer cell identity from Seurat to Palantir
#36
liuweihanty
closed
2 years ago
3
Segmentation fault with run_diffusion_maps
#35
mcfefa
closed
2 years ago
2
d = sce.tl.palantir(adata) returns "None"
#34
zmokhtari
closed
4 years ago
11
error on Run diffusion maps (KeyError: 'distances')
#33
zmokhtari
closed
4 years ago
1
palantir.presults.compute_gene_trends: Segmentation fault (core dumped)
#32
zengyingying2015
closed
4 years ago
0
Make rpy2 as an optional dependency
#31
ManuSetty
closed
4 years ago
1
error while reading mtx file
#30
Sumithrasank
closed
2 years ago
1
Fix for issue 27
#29
ManuSetty
closed
4 years ago
0
cell cycle correction
#28
ShobiStassen
closed
4 years ago
7
from_10x_HDF5
#27
afrahshafquat
closed
4 years ago
4
Install phenograph from git
#26
flying-sheep
closed
4 years ago
1
Don’t install things in setup.py
#25
flying-sheep
closed
4 years ago
2
Release on PyPI
#24
flying-sheep
closed
4 years ago
1
Fixes for issues 21 and 22
#23
ManuSetty
closed
4 years ago
0
it seems a little bug in this line
#22
dhtc
closed
4 years ago
1
scipy require 1.3 in scanpy
#21
wwang-chcn
closed
4 years ago
1
phenograph error during install
#20
sroyyors
closed
5 years ago
8
Unable to run the package with no replicates
#19
Huang-XN
closed
5 years ago
13
Apprxomiate neigbhors
#18
ManuSetty
closed
5 years ago
0
Is there a way to set the alpha parameter in the diffusion map?
#17
davisidarta
closed
2 years ago
5
Shape mismatch in terminal cluster identification
#16
concatenize
closed
5 years ago
6
save fig in palantir.plot.plot_gene_expression
#15
MichaelPeibo
closed
5 years ago
8
unable to repeat the results in multiple runs
#14
MichaelPeibo
closed
4 years ago
10
unable to calculate differentiation potential
#13
MichaelPeibo
closed
5 years ago
2
Access Denied h5 files
#12
2064240P
closed
5 years ago
2
Comparison notebooks
#11
ManuSetty
closed
5 years ago
0
Issue with eigen vector numbers in multiscale space function
#10
LouisFaure
closed
5 years ago
3
module 'rpy2.situation' has no attribute 'get_rlib_path'
#9
MichaelPeibo
closed
5 years ago
3
Replace bhtsne with MultiCoreTSNE
#8
ManuSetty
closed
5 years ago
0
installation failed due to bhtsne
#7
MichaelPeibo
closed
5 years ago
2
Fix scikit-learn dependency
#6
ivirshup
closed
5 years ago
1
Fix rpy2 version
#5
ManuSetty
closed
5 years ago
0
rpy2 raises Error
#4
ManuSetty
closed
5 years ago
1
Update plot.py
#3
LisaSikkema
closed
5 years ago
2
Merging repositories
#2
ManuSetty
closed
6 years ago
0
Updated dependencies, removed GraphDiffusion dependency
#1
ManuSetty
closed
6 years ago
0
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