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Hello, I use IGV 2.3.72 in Linux Ubuntu KDE Plasma. I got an error in displaying the application (basically, the GUI is messed up, the menu is not shown, the click action is not working,etc.) like bel…
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If this property is defined `defaultRowValue: {column1: columnValue1, column2: valueValue2, ...}` then all new rows will be set with predefined data.
Rows can be created from UI or by setting rowCoun…
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The final step in GenProp0039 is an HMM-CLUST - do we calculate this atm?
From the release notes: The method "HMM-CLUST" allows an overly broad HMM to identify proteins likely to belong to a system w…
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I'm getting the following error with a test run of `vamb` (commit: e70179c8d39496f49d0ff4d70e40d43876dc84f9):
```
Traceback (most recent call last):
File "../vamb/run.py", line 311, in
lo…
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### Feature description
It makes sense to have a standard set of fields for genome and transcriptome analyses that are more detailed than what we have now, to guide curation and create a consistent u…
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The context of the Protein bioschema example as of https://github.com/BioSchemas/specifications/commit/4b4164c7e05fe142608e7c353dd40741e7d5e36e#diff-9f02adf3a4b9af68b14034d923b4c66c
Means that ther…
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The Preferences -> Alignments tab has a "Mapping quality threshold" option. I would find a similar "Alignment score threshold" option very useful to filter out alignments with a poor alignment score.
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I noticed the TruSeq3-PE-2.fa and TruSeq2-PE.fa files (and possibly others, haven't checked) in trinity-plugins/Trimmomatic/adapters contain duplicated sequences, is that on purpose?
>PrefixPE/1
A…
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Hi,
I was trying to upgrade [bcbio-nextgen](https://bcbio-nextgen.readthedocs.io/en/latest/) package using the following command:
```
python bcbio_nextgen_install.py /home/jshi/local/share/bcbio …
jxshi updated
5 years ago
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Right now we plan to load the KEGG/BRITE terms as a CV.
There are a couple of issues. Look at the root pathway map[here as json](http://www.genome.jp/kegg-bin/download_htext?htext=br08901.keg&format…