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### Restructure
#4422 #4427 #4428 #4429
### Existing examples
- [x] examples/drawing/plot_house_with_colors.py #4263
- [x] examples/drawing/plot_four_grids.py #4264
- [x] examples/drawing/…
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**Describe the bug**
```
from cdlib import algorithms
for i in [algorithms.gemsec, algorithms.head_tail, algorithms.kcut, algorithms.lswl, algorithms.lswl_plus, algorithms.paris, algorithms.pycom…
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Currently we have an interface for OPTICS with custom method `extract_dbscan`. This is good for usability and visibility of the functionality, but means that a generic parameter search tool (like `Gri…
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Hi @MattPM,
Thank you for your work on this package - it has been a large improvement over other normalization methods. I am interested in integrating the DSB-normalized values with Seurat V4 for d…
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**Is your feature request related to a problem? Please describe.**
Similarly (not quite https://github.com/GiulioRossetti/cdlib/issues/114), there are centrality measures that can be poked at.
- […
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Hi,
I am trying to run **iomega-10-spectra-networking.ipynb** but I am getting error that these ****MS_library** is not defined** and also corresponding variables seems to be **undefined (MS_librar…
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I am trying to understand why the HRP optimizer doesn't give different results with different covariance matrices.
Here a simple sample:
```
import yfinance as yf
import pandas as pd
from…
ghost updated
3 years ago
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What is the correct procedure for running Weighted Nearest neighbour analysis on integrated data from multiple samples?
We have multiple CITE-seq samples. In our current analysis, we've integrated …
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## The motivation for this proposal
It would be nice if lightwood/native had 2 capabilites:
1. Be able to tell us, as part of making a prediction, what points in the training datasets were simil…
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Hi there,
From running the data with different resolutions and various discussions, e.g., #476, it seems that setting a higher resolution will give more clusters. And, from the discussion of Blond…