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Hi,
I am running `Canu 1.8` under SLURM control. On our cluster it is mandatory to set constraints, as `#SBATCH --constraint=`. This implies that I need to run all jobs on a maximum of e.g. 4 cores (…
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Here is my error log:
```
-- Found 1477 hosts with 24 cores and 62 GB memory under Slurm control.
--
-- (tag)Threads
-- (tag)Memory |
-- (tag) …
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Dear community,
I would like to ask how to know which step the canu is working? Is that possible to roughly estimate the time left canu run for read correction?
So far I saw the ```Crystal_all_1…
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Hi,
I have rerun Canu for several times but it always gave me this error message:
```
-- BEGIN CORRECTION
--
--
-- Mhap overlap jobs failed, tried 2 times, giving up.
-- job correction/1-…
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Hi,
I had a code running the `get.oturep()` command of my clustered sequences using the `abundance` method (using mothur v.1.41.1). However, with the new release, I now get a segmentation fault whe…
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I am trying to test canu using the E coli data set from the canu quick start page (https://canu.readthedocs.io/en/latest/quick-start.html). However, I get the following error:
```
-- CONFIGURE CANU
…
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Hello Canu Team,
I am trying to run Canu v1.8 and got an error that it
> failed to find the number of jobs in 'correction/0-mercounts/meryl-count.sh'.
Any help is much appreciated. Thank you.
…
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Hi,
I am attempting to run the last step of Canu (assemble) in my institution's HPC. Up to this point, I ran -correct and -trim without problems. Please see below my canu assemble job:
```
#!/…
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Hi, I'm gettin an error (see below) trying to assemble paired-end reads, as follows:
$ Trinity --seqType fq --left new_trinity_1_GD1995_limpio.1.fq --right new_trinity_2_GD1995_limpio.2.fq --CPU …
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Hello,
I have searched similar issues I ran into, but it did not solve my problem.
I use the cluster to run my jobs, and if I use 'useGrid=False', the job ran successfully but very slow which is not…