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when nichenet is applied to find regulatory networks between one cluster to the rest of the clusters in seurat object, does it compute cluster to clusters or group of cells to individual group of cell…
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**Appetite: 10**
**Requirements:**
- [x] Completed design that enables stories in chanzuckerberg/single-cell#15 (refine & update stories if needed)
- [x] First two implementation stages are outlined …
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Dear,
Thanks for this amazing tool!
I was trying nichenetr. I based myself on a bulk RNA seq dataset to find potential ligands. I wanted to know which could be the target genes of these ligands in…
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"No Data found" for PHAROS on http://marrvel.org:8080/human/gene/4851.
But there are 18 ligands:
https://pharos.nih.gov/targets/NOTCH1
![image](https://user-images.githubusercontent.com/2650955…
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It appears that the change in the electrostatic potential energy for Reaction Field (`CutoffPeriodic`) is vastly different depending on the cutoff length for the same set of configurations.
I know t…
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Hate to bother with more issues, but I'm only finding these because of how useful I've found ARAX/ARAX interface 😄
I tried running the following query for finding chemicals connected to SPMSY, which…
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deepchem/contrib/atomicconv/acnn/refined/get_acnn_refined.sh
```
test = dc.data.DiskDataset("datasets/scaffold_test")
print len…
dkoes updated
4 years ago
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Hi Koki,
I know this issue has been asked, but I have no idea how to solve that. So I start a new one.
I don't exactly know how you can generate the color vector of each cell and cell type vect…
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Hello, I am concerned about the work you do, and then I try to use my data, but the data under your data file, I do not quite understand what it means, can provide a data description? For example, dat…
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The Swissmodel SARS-CoV-2 models may be useful to link:
https://swissmodel.expasy.org/repository/species/2697049
We could link both "all" models (which are useful to browse) as well as specific hi…