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Hi,
I was trying to run pggb on a data set, and installed it using bioconda.
However, when I tried to run it, I got the following error:
```
Flag could not be matched: 'S'
smoothxg {OPTIO…
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Hi,
I am having problems similar to issue #690 related to building a phylogenetic tree.
Housekeeping first:
```bash
Anvi'o version ...............................: margaret (v5.1)
Profile D…
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https://github.com/rmcolq/pandora/blob/945c0255e99ab32fd5b056dc1c16ffdf611ef478/src/pangenome/pangraph.cpp#L310-L313
I've hit this error when running `map` with a minimum cluster size of 4, 5, 6, 7…
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**1. What were you trying to do?**
I was trying Mapping pair-end reads to pan-genome with vg giraffe.
**2. What did you want to happen?**
There should be a mapped.gam file output
**3. Wh…
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Hi all,
I followed the workflow of metaGEM (except using metaspades and das_tool instead of megahit and metawrap). when I used gtdbtk to classify the bins determined by das_tool based on binning res…
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Hi all,
I want to use the **Ensembl Mapping Pipeline for annation** in this paper ([A draft human pangenome reference](https://www.nature.com/articles/s41586-023-05896-x)) , but I could not find the …
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Hi,
Thanks for your work on this program. The method seems really elegant and we've had some really exciting results from it so far.
Here is a brief outline of our preliminary analysis:
- We…
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https://mp.weixin.qq.com/s/jHVlmMZHAn_kWLHcO1oknQ
ixxmu updated
7 months ago
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Hi, @lh3
I saw one commit about SRF for filtering LTR output. But could we use SRF to annotate TEs in the high repeat content genome, such as maize, especially for pangenome? Does the SRF have an …
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**1. What were you trying to do?**
I created a test pangenome with the [Minigraph-Cactus pipeline](https://github.com/ComparativeGenomicsToolkit/cactus/blob/master/doc/pangenome.md) using the pro…