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Hi everyone,
Due to some technical issue, I must first construct my system in GROMACS, convert the topology to AMBER and finally back to GROMACS. Thanks to the support on Parmed the process is smoo…
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Hi all,
It looks as though there may be a bug in Crux reporting masses for some modifications. I am seeing this in the PepXML:
```
```
It's a rare error only happening a f…
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By default, IDMapper maps peptide ids to the convex hulls of `featureXML` data. For `consensusXML`, it uses the consensus centroids instead. This makes sense for unlabelled data, where the convex hull…
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Thank the developer for providing so a fantastic tool for DIA data analysis.
I want to request two features of DIA-NN.
1. The number of peptides of identified protein in protein intensity matrix.
2…
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Hello,
I am trying to create an in-silico predicted spectral library in DIA-NN and I am interested in detecting variable carbamylation of lysine (K) and arginine (R), as well as the carbamylation a…
buijt updated
12 months ago
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Hi,
I want to analysis the Methylation in my data. So I set the user defined PTM
in my config file, I wrote:
data:
enabled: 1
silac:
enabled: 0
filters:
enabled: 1
contaminants: 1
protei…
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**Steps to Reproduce**
1.Macro mode
2. Sequence mode >> RNA >>add AAATTT >> DNA >> add AAATTT >> Peptides >>add AAATTT
3. Undo several times >> Enter several times.
4. Redo several times >> Enter …
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```
Hi all,
Sean pointed out to me that the current mzid specifications appear to rule out
the coding of de novo approaches. When we made the transition from mzid 1.0 to
1.1, we made PeptideEvidenc…
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> ACTION: Everyone: Consider the following TripleTOF spectrum and see how to support it
>
> mzspec:PXD013210:TTB20160722_ISBHJOMXX001879_r01:scan:19809:SITS[phospho]PTTLYDR/2
> https://db.systemsb…
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This issue is related to #136, which happens due to a but in the C++ `RcppIndent::getScores()` function, that counts the number of cvParams on the first `SpectrumIdentificationItem`, but then crashes …