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Dear authors,
Currently, the ir_neighbors algorithm consumes over 100G of memory of data from 55k cells, causing memory failures on the server.
Is there any way to limit memory consumption and i…
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please `sigProfilerExtractor` will not run with my vcf file.
How can i convert my vcf file to the ICGC-like vcf format you mentioned in the manual? I'm searching online but haven't got any hints yet…
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I'm integrating 5' RNA-seq and TCR data, works well thanks. One question, `adata[adata.obs["has_ir"] == "False"].obs["clonotype"]` includes unique categories for each cell in the form `"n_5_no IR"`, a…
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when I try to connect two "ht_neuron" with "tsodyks_synapse" even if the "receptor_type" has been specified.
I tried both in the cell-model as well as in the "connection".
I got the following error…
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### Issue description
*Trial listing sites are not filtered by active recruitment status*
Only trial listing sites with recruitment status listed below should be displayed in results
- active
- …
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GO:0000187 | activation of MAPK activity
do we need this term? The only think that is annotated to it is
MF MAP kinase kinase activity
(its a MF in the BP ontology)
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Per request of HIPC/Bjoern Peters for current data analysis needs. The CD8+ version of this cell type was added previously #560, #110. A few adjustments to synonyms for that [term](http://purl.oboli…
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Hi there,
Thanks for your great work on this package! I have a question/suggestion...
First the suggestion: I'm interested in visualizing a differential connectome via the centrality plots you've d…
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Curating, curating, curating...
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The current `net.connectivity` data structure is not super readable and it's not efficient either. We should rethink this a bit. I propose that we start with this:
```py
net.connectivity['L2Pyr ->…