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Hi Ricky,
I've noticed that intermediate steps in the trajectory of the numerical solution are moving away from the target (ground truth). I'm querying intermediate steps by modifying the integrat…
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Just discover some edge case which we have not thought about it before. Consider the model
```
def model():
x = sample('x', dist.Normal(0, 1))
y = sample('y', dist.Uniform(x, x + 1))
```
…
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Hi there,
I am just trying to use your package on flow cytometry data. I read in the User Guide that "Currently, alternative input data such as ATAC-Seq or cytometry data are not yet supported, altho…
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This bug was discovered in dynverse/dynwrap#140. When embedding_type is set to "umap", ti_paga produces an error.
``` R
library(dyntoy)
toy_data
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Hi, the dynverse group,
This is a fantastic tool! I have a question on add_dimred():
I want to compare the performance of different dimension reduction methods (including my own method) on traject…
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Thanks again for working on the windows implementation of this! I've got the basic cases of `ti_paga()` working on my data, but when playing around with the parameters I ran into the following error w…
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Fantastic effort on this package, I'm really looking forward to being able to use TI methods from a common interface in R. I've followed the installation instructions and successfully installed the pa…
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Which version should I stick to?
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Hi dyno community,
I was trying to run slingshot and paga methods on my data. Since paga method required a prior, I set "start_id" based on some assumptions. Using the dataset, I could get slingsho…
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This issue is noticed by @neerajprad . The script
```
import jax.numpy as np
from jax.scipy.special import logsumexp
from numpyro.mcmc import mcmc
def dual_moon_pe(x):
term1 = 0.5 * ((np.l…