dynverse dyno issues - Githubissues

dynverse / dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕

https://dynverse.github.io/dyno

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Caching models to work in HPC environments

#145 poloarol opened 2 months ago
0
Error in `map_fun()`:

#144 hmlopezbertoni opened 3 months ago
0
model <- infer_trajectory(dataset, ti_scuba(N_dim = 1L))

#143 guanghui-tan opened 7 months ago
0
infer_trajectory(dataset, ti_scuba())

#142 Gh-Genetics opened 7 months ago
0
cannot open the connection

#141 mavino opened 1 year ago
4
The `name` provided ('clock-o') does not correspond to a known icon

#140 erzakiev opened 1 year ago
0
Error with singularity

#139 Alunethy opened 1 year ago
0
FATAL error using dyno on HPC with singularity

#138 FERWoods opened 1 year ago
0
order of tile in heatmap

#137 bmyury opened 1 year ago
0
Using dyno with Apple silicon

#136 EmanuelSoda opened 1 year ago
5
add_root function

#135 TarekGharsalli opened 1 year ago
1
infer_trajectories function

#134 TarekGharsalli opened 1 year ago
0
Issue wrapping expression and counts matrix

#133 rtippalagama opened 1 year ago
0
guidelines_shiny problem

#132 Hollandlu opened 1 year ago
0
docker pull takes too long time

#130 yueli8 opened 2 years ago
0
How to use infer_trajectory with sif of kinds of trajectory inference function

#129 Liuxiaoqin95 opened 2 years ago
0
How to change the color when using plot_dimred?

#128 CromitDolores0808 opened 2 years ago
1
error when running celltree_maptpx

#127 ch8316f5eyu opened 2 years ago
0
Fail to install dyno

#126 lh12565 opened 2 years ago
0
Use local container image

#125 Simon-chevolleau opened 2 years ago
0
Error in detect_backend() : Couldn't detect docker or singularity. Are you sure either is installed?

#124 1378989 opened 2 years ago
2
Using plot_dimred to plot pathway score to trajectory

#123 CromitDolores0808 closed 2 years ago
0
Error: --dataset should contain a pathname of a .loom or .h5 file

#122 tianlt opened 2 years ago
5
Error in "infer_trajectory"

#121 JarvanDi opened 2 years ago
0
Documentation is very sparse, terms such as milestone, waypoint etc. are to be properly defined

#120 soumitrakp opened 2 years ago
0
a problem with infer_trajectory

#119 Hiroki0905 opened 2 years ago
1
a problem of too long runtime

#118 Hiroki0905 opened 2 years ago
0
How to deal with the batch effect in dyno?

#117 Dragonlongzhilin opened 2 years ago
0
weird plot with paga trajectory

#116 y-gao opened 2 years ago
0
Batch Effect

#115 angarb opened 2 years ago
1
Fail to run infer_trajectory(dataset, method()) on MAC

#114 subkhankul opened 2 years ago
2
Error when using plot_dimred

#113 CromitDolores0808 closed 2 years ago
5
Error with plot_dimred when coloring by a feature

#112 TJonCooper opened 3 years ago
3
plot_dimred() error

#111 Woqo closed 3 years ago
1
Not able to infer_trajectory using any model with dynverse, Error in match.argError in match.arg(backend, choices = c("docker", "singularity")) : 'arg' should be one of “docker”, “singularity”

#110 ammarsabir15 closed 3 years ago
3
Error during trajectory inference

#109 SebRW opened 3 years ago
1
infer_trajectory returns nothing

#108 alexQiSong closed 3 years ago
1
How to infer trajectory using dynverse with UMAP coordinates

#107 rana2209 closed 3 years ago
0
Cannot install the package

#106 erikfel97 closed 3 years ago
2
fail to run infer_trajectory

#105 ch8316f5eyu opened 3 years ago
9
Running dyno fails

#104 jingshuw opened 3 years ago
1
I can obtain different results when I process my data through ti_slingshot or R package "Slingshot"

#103 chuiqin opened 3 years ago
2
Plot 3D UMAP with PAGA

#102 Bio-data-tricks opened 3 years ago
0
Different results of UMAP in dynverse and scanpy

#101 Bio-data-tricks closed 3 years ago
0
root cell or milestone not provided, trying first outgoing milestone_id

#100 grimwoo opened 3 years ago
1
How to construct a PAGA path ?

#99 Bio-data-tricks closed 3 years ago
0
Wrap_expression function with non scRNAseq data

#98 Bio-data-tricks closed 3 years ago
0
how to import existing umap into dyno

#97 wfma closed 3 years ago
6
Dyno installation fails: tries to install "unknown package"

#96 mcsimenc closed 3 years ago
2
How to import an integrated data from seurat V3 to dyno?

#95 Dongxu-Zheng opened 3 years ago
7