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Hello,
I've created a repository to handle experiments for which rMATS was executed on separately, to make it easy to make a consensus set of junctions (unique union of all the samples)
I make …
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Hello, I have a few questions which might be very basic to others.
1. Can we convert the 3Di tokens produced by foldseek into the actual 3D structure format like PDB files?
2. How can I compare …
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## Describe the issue
Hello,
I'm facing two issues about consequences reported by VEP for two variants.
Stop_gained is not reported for both while the mutation leads to a shortened transcript.
I…
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At the moment `amino acid` (CHEBI:33709) has parent 'organic acid' (CHEBI:64709), which is accurate. But `organic acid` has parent 'flavanoids' (CHEBI:72544) which in turn has parent `plant secondary…
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_From [batchelorc@rsc.org](https://code.google.com/u/batchelorc@rsc.org/) on June 01, 2012 05:39:21_
We are lab-scale beasts and yet the molecular-scale nature of the things we inhale and imbibe have…
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### Description of the bug
The python script [extract_plmutils_nucleotide_sequences.py](https://github.com/Arcadia-Science/peptigate/blob/main/scripts/extract_plmutils_nucleotide_sequences.py) extr…
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follow on from
https://github.com/geneontology/go-ontology/issues/15022
Make L-amino acid the default (but exact synonym)
Only make a term if D-form only if required
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I'm discussing with @bas-rustenburg (the student heading up the constant-pH work) what setting up a constant-pH simulation should look like to the OpenMM user using the `app` layer. We'd like your in…
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Dear JAX-team,
since today 23.05.2024 we (Centogene company) are facing the whole day already the following problem:
trying to open random HPOs end up with the following error message
![error m…
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Having a function to calculate the RMSD between small molecules whose atoms are not necessarily listed in the same order seems like it would be potentially very useful, although it would need some gra…