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Hi, I'm trying to run the quickstart-build for avian-flu, but I got this error. I'm using nextstrain.cli v.6.2.1 and augur v.19.2.0. Some idea to fix it?
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ERROR: A…
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hivtrace -i test.fas -a resolve -r HXB2_prrt -t .015 -m 500 -g .05 -c
Traceback (most recent call last):
File "/Users/opt/miniconda3/bin/hivtrace", line 8, in
sys.exit(main())
File "/Use…
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### Gloo Edge Product
Enterprise
### Gloo Edge Version
v1.15
### Is your feature request related to a problem? Please describe.
Currently for the Vault Integration in Gloo edge when usi…
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### Current Behavior
Just tried out `parse` for first time. It seems certain args, like `--fields` are required, but this doesn't seem to be [documented](https://docs.nextstrain.org/projects/augur/en…
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The Auspice 2.46.0 [passed CI](https://github.com/bioconda/bioconda-recipes/actions/runs/5049250974) and I see the Linux package is on Anaconda. However, the OSX package is still on v2.45.1 on Anacond…
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doesn't handle multiple characters well, in as answer if there is only one instance of the character but the guess has 2 given the correct gyb value it will remove all words with a single instance of …
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* metadata*.tsv.gz
* proximities.tsv
* priorities.tsv
* index.tsv
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In P9S, at the start of the limit cut 1 phase, the callouts should be expanded as follows:
"2" -> "2 - First dash, third tower"
"4" -> "4 - Second dash, last tower"
"6" -> "6 - First tower, third…
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### Context
Augur clades doesn't seem to throw a helpful error when required options are missing.
Also, the documentation doesn't seem to mention which options are required.
E.g. (from a user w…
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**Description:**
ValueError thrown when running augur backend --help and running augur --help commands
**…