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**Describe the bug [Required]**
Title not …
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Hi!
I'm trying to build a template model using Trypanosoma cruzi. However, I'm gettin an error:
NITDB: connecting geneDB
INITDB: connecting notesDB
[('iIS312', 'iIS312.gbff', 'iIS312.xml')]
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Hello,
Is there a tutorial like https://opencobra.github.io/cobratoolbox/latest/tutorials/tutorialModelSanityChecks.html for pycobra or some functions to make model sanity checks?
Regards
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- [x] loading/saving functions
- [x] make_bigg_compliant option:
- [x] switch met/rxn ids
- [x] make compartments compliant
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As in https://github.com/lervag/vimtex/issues/653 I get `vimtex: Compilation failed!` even though the compilation is successful.
```vim
" vimrc
set nocompatible
let &rtp = '~/.vim/plugged/vimte…
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**Note: I am writing a script that will process all files and output their errors**
```LaTeX
- Log3.log contains 582 outputs of LaTeX documents
```
In the `Tai branch` inside `\Documentation\hun…
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I installed everything and ran the carveme_init. When I try to run the example carve --genbank GCA_000005845.2 -o ecoli_k12_mg1655.xml I get this error message:
Traceback (most recent call last):…
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I'm trying to use pandoc 2.5 to convert an .md file to html (among other filetypes I want to render this file to) and I'm finding a problem probably related to the shell I'm using
I'm using Debian,…
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### Description of the issue:
The MetaNetX ID's of reactions r_4601 till r_4628 are in the model.rxnNotes table instead of model.rxnMetaNetXID in the matlab file of version 8.3.5.
#### Expected …
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Start from the BiGG compliant GEM uploaded to caffeine, available [here](https://github.com/BenjaSanchez/notebooks/blob/master/caffeine-fix-yarrowia-map/iYali-model.xml).
- [x] Adapt pipeline in [ecM…