-
Dear all,
I checked on the new website that version 1.78 is under a license "All rights reserved". Well, I would like to know if, nowadays, it is allowed to translate the documentation to the Portu…
-
### Setup
I am reporting a problem with Biopython version 1.76, Python version 3.7.7, and operating system as follows:
```
3.7.7 (default, Apr 15 2020, 05:09:04) [MSC v.1916 64 bit (AMD64)]
CP…
-
### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…
-
Hi,
I'm (trying to) using PreLnc but I get the following error when calling sklearn:
> ValueError: Expected 2D array, got 1D array instead
do you know how to overcome this problem? I am using …
-
The `Atom` class only supports atom/element charges for PQR file formats. However, charges can also be indicated at the very end of a line in PDB files such as in this example:
```
ATOM 1 N …
-
Hi,
I am new to biopython and the KGML module. I am wondering if there is a way to highlight a pathway based on a compound. Below is the code I am using, with the help of the KGML tutorial:
```
i…
-
MingwPy related PRs to Numpy that got reverted (in https://github.com/numpy/numpy/pull/6534) are https://github.com/numpy/numpy/pull/5614 and https://github.com/numpy/numpy/pull/6354. The issues seeme…
-
### Setup
I am reporting a problem with Biopython version 1.78, Python 3.8, and operating
system Windows 10 as follows:
### Expected behaviour
Write a GeneBank file from a SeqRecord object o…
-
### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
Python 3.7.6 (default, Jan 8 2020, 19:59:22)
[GCC 7.3.0] :: Anaconda, Inc. on linu…
-
oncotator encounters an error when parsing a VCF file generated with the GATK pipeline.
oncotator v1.9.0.0
```
2016-06-03 15:35:58,631 INFO [oncotator.utils.SampleNameSelector:90] Sample name is in …