-
Hi there!
I am trying use mgatk's `call` mode to call variants on bulk RNA-seq data. It appears the following files are not generated.
*.variant_stats.tsv.gz
*.cell_heteroplasmic_df.tsv.gz
*…
-
@z5ouyang @xinmin-zhang Example here - would like to also have the title page show TST11781_Lv:Bulk RNA seq......
![image](https://user-images.githubusercontent.com/71140858/131742867-5fc0ef94-9e20-4…
-
Hello,
I find this package awesome I would like to consult your opinion on its potential application to our specific problem/question and also report on some difficulties that I am getting on setti…
-
Has this method been tested also for bulk-RNAseq data?
-
Hi Angeles,
Thank you for tappAS and the tutorials, very nice work!
I am working with bulk short-read RNA-seq which I have mapped to GRCh38.97 transcriptome using Salmon. I am trying to run FDA ta…
-
Hi,
Thank you for developing this great tool!
I have some issues running ecotyper recovery with a small set of 100 bulk RNA seq samples. I have previously successfully run your bulk lymphoma and…
-
https://mp.weixin.qq.com/s/847Zc6QbU44LSL3l_STSpg
ixxmu updated
2 years ago
-
[Splicing mechanism](https://www.youtube.com/watch?v=vMMt0jA8dcM)
Intron
- starting point: 5' (5 prime) splice site: splice donor, GT***
- ending point: 3' (3 prime) splice site: splice acceptor, *…
-
https://mp.weixin.qq.com/s/0NbOjNKEN_sizlofclHA4w
ixxmu updated
2 years ago
-
Dear Alex,
Congrats on the new STARsolo preprint. I am using a commercial variant of the BRB-seq protocol (called [QuantSeq](https://www.lexogen.com/quantseq-3mrna-sequencing/#quantseqworkflow)) to…