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https://mp.weixin.qq.com/s/6ZuGqbBuEHkQ7M-dmfY-wg
ixxmu updated
2 years ago
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Hello IReNA tool developers,
Thank you for creating this integration network tool. It's pretty neat and I plan on using this for my own research work actually. I have a quick question. I have avail…
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https://mp.weixin.qq.com/s/zGUmK8iPmV2u1ktNUxzmFg
ixxmu updated
2 years ago
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Hello,
I'm trying to generate sig matrices w/ process_dgTMatrix_lists, however of many cell types I have. The number of matrices/cell types get decreased in the output. Also the cell types I have d…
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The data format for gene sets should also support the export of differential expression results and a user uploading their own distribution for a gene set. If there is a standard format for differenti…
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Thank you team for differential NicheNet.
I am trying to infer the cell-cell communication using flow sorted bulk RNA-seq data.
Can I use differntial NicheNet approach to assess the ligand-receptor…
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Hi,
When I use the default k-mer length of 31 to generate index, it throws warnings like 'ENSTxxxxx had length less than equal to the k-mer length of 31'. I checked these transcripts, and most of the…
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Hi,
as discussed, here would be a collection of figures to have in the manuscript and supplementary. The final manuscript has a word limit of 5000 and a page limit of 7 including all figures and ta…
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Hello,
I am using your package to deconvolute my bulk RNA seq data. I wanted to try out the `SCDC_prop_subcl_marker` function, because I have closely related cell types, so I grouped some of these …
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[Goal 4](https://github.com/carpentries/strategic-plan#goal-4-facilitate-the-creation-and-maintenance-of-relevant-high-quality-community-curated-curricula) of our strategic plan is to "Facilitate the …