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Hi,
This is more of a question I had some tumor-normal data run with an unknown capture panel. I assume I can run it whole genome but am concerned the variant detection and copy number estimates w…
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Hello!
I am trying to get the Seabird python module to work that I installed using PIP. In command line when i write "seabird," it shows seabird help. But when using seabird commands like "C:\seabird…
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I already use `--AA_runmode` to stop create the output for SV visualization. But still show process of SV View and stuck here for 5days. :
```
[MOSEK:INFO] Beginning MOSEK call
[root:INFO] …
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Hi,
I am trying to run CNV-ClinViewer locally through RStudio Server, installed on Ubuntu 20.04 LTS. During the installation of all dependencies, the installation of `bedtoolsr` fails because RStud…
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INFO:root:preprocess 12720 2425 (12720, 2425)
INFO:root:done preprocessing...
True
INFO:root:getting spot network...
INFO:root:initializing labels...
Traceback (most recent call last):
File "r…
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Love it.
Do you have dragen_sv_merge.py available for interested individuals? Merging SNP datasets with SV datasets has been trickier than I imagined - it would be lovely if you have a solution!
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Thank you very much for developing this package!
I'm relatively new to the coding world and was wondering if you could advise me on the follow issue. I started working through your workflow with on…
SITRR updated
10 months ago
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Hello,
Thank you for this nice package!
When I use human genes, the output CNAmat does not contain gene symbol. However, when I use `genome="mm10"`, there is a column in CNAmat which stores gene…
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Hi,
I want to supply multiple BAM files to the cnv tool with the -I argument; I was able to do so with *bam, but I now want to limit it to only certain BAM files in the folder (without having to m…