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Once we detected synapses and classified the synaptic partners, we can generate a Connectome Viewer for it.
Open questions are:
- What should the data formats look like?
- How are the neurons classifi…
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Refer to the issue: https://github.com/connectome-neuprint/neuprint-python/issues/12
based on this an option of `max_distance` has been created in `heal_skeleton` in `neuprint-python`, please adapt t…
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There are a few inconsistencies between plot_connectome and view_connectome that means that one is not interchangeable with the other. In particular, I note:
* node_coords is called coords in view_…
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## Project info
**Title:**
**Project lead:**
**Project collaborators:**
**Registered Brainhack Global 2020 Event:**
**Project Description:**
**Data to use:**
**Lin…
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Hello,
I have been trying to install the Connectome mapper, but I am getting an error message while setting up the conda environment:
```
(base) Davids-MBP-3:Applications mynotebook$ conda env…
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## Resource info table
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| :------------------ | :------------------------…
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When skeletons are fetched in `neuprint-python` with the heal option enabled, sometimes it heals fragments that are far apart. For e.g.: Consider the body id `1670597533` when it is fetched with heali…
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[As reported on forum](https://community.mrtrix.org/t/thalamus-proper-removed-from-freesurfercolorlut-txt/3721)
Contents of `FreeSurferColorLUT.txt` version 6:
```
47 Right-Cerebellum-Cortex …
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Hello,
This fiber (supposed to be Left AF) appears to be centrally located in the right place, but is mirrored across the posterior-anterior axis. I am using the most recent TractSeg build on a HPC…
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the surface and connectome views have improved so we may want to update the screenshots in this section of the user guide:
https://nilearn.github.io/plotting/index.html#interactive-plots