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### Description of feature
After completion of https://github.com/nf-core/modules/issues/5099, we need to update the subworkflow which will enable additional tests, contributing to #1195
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CentOS Linux 7
perl v5.26.2
gcc version 8.3.0
error:
++ pwd -P
+ ROOT=/lustre1/leili_pkuhpc/software/MaSuRCA-3.4.2
+ '[' -z '' ']'
+ DEST=/lustre1/leili_pkuhpc/software/MaSuRCA-3.4.2
+ mkdir…
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I'm using STARsolo on a 10X v2 scRNA-seq dataset where the barcode read contained the CB + UMI sequence is not 26 base pairs but 150 base pairs in length. In order to run STAR solo, I set the --soloBa…
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If we're tracking data over time, we should be able to set manual limits and send automated alerts when a report is submitted with samples that exceed these.
For example: `% aligned` must be > 80%.…
ewels updated
3 years ago
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Is it possible to stream data into FastQC from STDIN, such as in the following example:
```
cat *.fastq.gz | fastqc
```
This would enable multiple fastq files to get a single report?
I am using…
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I'm trying to run DADA2 via QIIME2 and noticing that it's very hands-on and not completely automated.
**Are there any reliable tools that can indicate where I should trim my forward and reverse rea…
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Add QC summary and reporting. Include fastqc for users sake, merged into multiqc. Todo make optional run fastq only parameter for pipeline.
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It seems jobs on the test server get stuck in the waiting state. As reported by MingChen0919 here: tripal/tripal_galaxy/issues/101.
I was able to duplicate this problem by submitting a job. It si…
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Hi Felix,
After performing my alignements with bismark, I get mapping efficiencies around 25-30 %.
I had read some post where you said that the error could come from the paired end library. So I…
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https://mp.weixin.qq.com/s/KslGpIQIASsftityzGXE8g
ixxmu updated
2 months ago