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Hello! I was wondering if you could separate each barcoded cells reads into a new fastq file, 1000 to 10,000 fastq files per 10x genomics experiment. Do you think SONAR would be able to process them…
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## New Use Case
Aspect | Detail
------------ | -------------
Summary | Web-based tool aimed at students to simulate small circuits with NEST, which runs as a service.
Usecase Group | Small Ci…
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I am trying to run Trinity on a paired end dataset and it gets stuck in a failing and retrying loop. My input is below.
`Trinity --seqType fq --left 4_unmappedreadsformatted.1,5_unmappedreadsformat…
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Hi. I'm trying to do some simulation to calculate power for a single cell RNA-seq study. I'm getting hung up with the in silico parameter simulation function.
Just running the example I get this:
…
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sr320 updated
4 years ago
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Hello, everyone!
Hello, Brain!
I got a error report (for jellyfish) in my Trinity 2.9.1 software running procedure. I think the mistake might be from my sequence (probally from the head name), but I…
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Some of the in silico scores I care about are below the fold (have to click more) so they often don't make it into screenshots in analysis meetings. I ran the order by the analysis team and people see…
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Hi, further to [another issue](https://github.com/Nesvilab/philosopher/issues/139) I was discussing which I now believe to be resolved, I am using the TMT pipeline to analyse databases that I am downl…
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Hi, it's not an issue, but just to let you know that we published a paper to present our simulator sismonr, that relies on BioSimulator for the stochastic simulation. Thanks for your package and your …
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Hi, I'm following the pipeline for TMT analysis tutorial to perform an analysis on files which I have converted to mzML from raw using MSConvert on linux. I am getting the following error at the Pepti…