scharch SONAR issues - Githubissues

scharch / SONAR

Software for Ontogenic aNalysis of Antibody Repertoires

GNU General Public License v3.0

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ID/DIV script can't recognize certain V IDs from the germDB files

#21 ressy opened 9 months ago
2
rebase stale branch to resume development

#20 scharch opened 1 year ago
0
Long processing time on 1.5_single_cell_statistics.py

#19 asjureka opened 2 years ago
1
ID/DIV plotting changes

#18 ressy closed 1 year ago
2
id-div script now looks for project tree dir before it's defined

#17 ressy closed 2 years ago
3
Merge in single cell changes and a bunch of other dev work

#16 scharch closed 2 years ago
4
ID/DIV plots don't shown sequences for certain edge cases

#15 ressy closed 1 year ago
2
Warning message: In fun(libname, pkgname) : couldn't connect to display "localhost:10.0" while "sonar get_island"

#14 Carpenter232 closed 2 years ago
1
error in blastn output format

#13 madisonberry closed 3 years ago
7
Assigned germline V gene not necessarily used as root in 3.2-run_IgPhyML.py

#12 ressy closed 3 years ago
1
Cluster number for each sequence id

#11 NikaAb closed 3 years ago
2
X11 error

#10 wangsiling123 closed 4 years ago
4
No identity/divergence plot file with only one antibody selected

#9 ressy closed 1 year ago
2
Discard master-slave words

#8 bopopescu closed 4 years ago
0
SONAR with single cell sequencing??

#7 methornton closed 4 years ago
2
Vignette breaks down with lack of islandSeqs.txt page 3

#6 methornton closed 4 years ago
6
igphyml wrapper crashes when given custom V library

#5 ressy closed 4 years ago
2
FYI: Biopython 1.74 breaks backwards compatibility in NcbiblastnCommandline

#4 ressy closed 2 years ago
2
Errors with vignette during module 3.2

#3 ressy closed 5 years ago
3
cp sonar ~/bin. No such file

#2 HuiwuZhao closed 4 years ago
2
Tools in third-party dir cannot execute

#1 Dongnini closed 5 years ago
3