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Dear Xiaowei
I am using vcf2kinship command to generate kinship matrix, the command are as below:
vcf2kinship --inVcf chrall_notmonomorph.vcf.gz --ped phenotypes_all.ped --bn --minMAF 0.050000 --…
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Dear Xiaowei
I have checked single chrosome vcf.gz file and bgziped chr.all vcf.gz file for generating kinship matrix.
It seems that in chr.all vcf.gz file some VCF line does not have correct col…
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I am using RVtest Program version: 20170228 and creating a covariance matrix with window size of 500KB, to reduce the size of the matrix. I see the following error in my log files, but the analysis ru…
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Hi Author,
When I used the gemma for GWAS analysis (Version 0.96, 05/17/2017), I encountered the errors below. How can I fix it?
Thanks
Xin
```
##############################################…
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If get_common_ids returns 0-length vector ind2keep, subsequent call to
decomp_kinship(kinship[ind2keep,ind2keep])
crashes R when Rcpp code called. Brian
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User journey
- [x] 1. from hearing about Fellowships to being in one cohort
- [x] 2. from belonging to a Fellowship to updating projects and connecting to other Fellowship members
- [x] 3. fr…
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To Michael and Masha: existing Uniparser paradigms do not cover high animate inflection, as doesn't the lexicon. High animates is a pretty closed class, so maybe someone has a list of these nouns? Kin…
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Especially in cases where we have people that are not in the pedigree (see #23) we want to show the kinship coefficient, i.e., a score of relatedness between all people.
We will realize this as a …