zhanxw rvtests issues - Githubissues

zhanxw / rvtests

Rare variant test software for next generation sequencing data

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exactCMC N00 is less than N10 and N01 < N11

#153 samreenzafer opened 2 months ago
0
--setFile how are overlapping regions handled?

#152 samreenzafer opened 2 months ago
0
Segmentation fault while running --meta cov

#151 samreenzafer opened 4 months ago
0
Order of Operations when using Frequency filter and Sample exclusion.

#150 samreenzafer opened 5 months ago
0
NAs in assoc file

#149 lubapardo opened 9 months ago
0
Segmentaion fault - rvtests using RStudio Workbench

#148 danishdyna closed 1 year ago
1
Output explanation

#147 alexandransmith opened 1 year ago
0
Output MAC or MAF for SKAT-O kernel test

#146 wilsonava opened 1 year ago
0
Runtime Bug Chromosome 2 UKB WES

#145 wilsonava opened 1 year ago
0
SKAT/CMC: Missing covariates are not imputed, but dropped

#144 katyaorlova opened 1 year ago
2
Incorrect phenotype file format [ m2_pheno.pheno ], check column number

#143 wilsonava closed 1 year ago
0
Some permutated p-values >1

#142 UrsaGitHub opened 1 year ago
0
No variants found in gene

#141 jzollner opened 1 year ago
0
Rvtests SKAT,SKATO keeps on running after removing one gene from '--gene' list

#140 ChakrabortyShreya opened 2 years ago
0
Reference allele output from rvtest

#139 JuRaGa opened 2 years ago
0
What/where is --outputRaw collapsed genotype?

#138 aejen opened 2 years ago
0
Instructions to build without all of the third parties ?

#136 mboisson closed 2 years ago
5
fix sqrt(VarQ) when VarQ<=0

#135 lindenb opened 2 years ago
1
What do the duplicated lines in burden test with covariates output mean ?

#134 marlenebrs opened 2 years ago
0
SKATO: rvtest frozen/stalled (3 variants) (minimal example provided)

#133 lindenb opened 2 years ago
1
User-specified weight per variant

#132 ChristianDina opened 2 years ago
0
FAMILY BASED STUDY Fam Score

#131 medinacarolina opened 2 years ago
0
'setFile' format 0-based or 1-based ? refFlat: only exons ?

#130 lindenb opened 2 years ago
1
Correct the Command in the README

#129 michael-grace opened 2 years ago
0
CHrX warning

#128 medinacarolina opened 2 years ago
0
Rvtests SKAT-O output

#127 anna-321 opened 2 years ago
0
Job run time

#126 SamiFarashi opened 2 years ago
0
License that applies to rvtests?

#125 heatherkellyucl opened 2 years ago
1
Support non-human variant analysis?

#124 yige-luo opened 2 years ago
0
Segmentation fault in multiallelic SKAT analysis

#123 Tijs-dot opened 3 years ago
1
Wrong VCF header

#122 JuRaGa opened 3 years ago
0
Effect in single variant analysis?

#121 Sandyyy123 opened 3 years ago
0
Meaning of the p-values columns and repeated variants in the single variant test

#120 MargheritaSq opened 3 years ago
0
Segmentation fault core dumped

#119 r-blanchet opened 3 years ago
0
Annotation and --annoType filter

#118 dianacornejo opened 3 years ago
0
Compilation errors

#117 Jiasong-Duan opened 3 years ago
0
Meta analysis tests for burden units

#116 aschluter opened 3 years ago
0
Fix build: Eigen has moved, and vcfUtils Makefile is referencing a file that does not exist

#115 pettyalex opened 3 years ago
0
installation fault

#114 flapa86 opened 3 years ago
4
vcf2kinship support bgen input or not?

#113 Shicheng-Guo opened 3 years ago
0
rvtest genebased association

#112 Jiafeng-Li-leon opened 3 years ago
0
kinship binary trait

#111 medinacarolina opened 3 years ago
0
SKAT test for rare copy number variation

#110 xysj1989 opened 3 years ago
0
Update eigen's URL

#109 lelimat opened 3 years ago
0
"eigen" package not available on bitbucket

#108 lelimat closed 3 years ago
2
Dose the result have a difference between Rvtest and R SKAT package?

#107 jeong2624 opened 3 years ago
0
Fix logger typo for FLAG_siteMACMin.

#106 koido opened 4 years ago
0
WARN: Failed to load spectral decomposition results of the kinship matrix (.xHemi.eigen file is incorrectly reused across independent runs of rvtests)

#105 dpanyard opened 4 years ago
13
Empty string in phenotype file not handled as a missing value

#104 dpanyard opened 4 years ago
0
How to hide the covariate results from the output from SKAT and Burden test

#103 suraj86nong opened 4 years ago
1