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zhanxw
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rvtests
Rare variant test software for next generation sequencing data
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SKAT p-value show "-nan" in gene-based association
#102
suraj86nong
opened
4 years ago
0
rvtests with BCF file
#101
dandicorpo
opened
4 years ago
0
rare variant analysis hangs/stops midway
#100
ruthchia
opened
4 years ago
4
Issue with processing Chromosome X summary files
#99
jdarias93
opened
4 years ago
3
RVTest make fails
#98
liewald
opened
4 years ago
1
Plink .bed file input
#97
oalavijeh
opened
4 years ago
0
Chromosome Y Data
#96
KerryAnderson
opened
4 years ago
0
Using --sex as covariate
#95
ghost
opened
4 years ago
1
different betas and standard errors with different versions of rvtest
#94
lubapardo
opened
4 years ago
2
Fix issue #92.
#93
the-x-at
closed
4 years ago
1
vcf2kinship: Incorrect IBS calculation for missing data
#92
the-x-at
closed
4 years ago
1
Compilation issues and segmentation faults
#91
kassaq
opened
4 years ago
2
[ERROR] Error loading gene file or gene list is empty!
#90
MDiezFairen
opened
4 years ago
1
Segmentation fault when using --vt price
#89
Thatguy027
opened
4 years ago
1
[ERROR] Cannot specify both gene file and set file
#88
weizhousjtu
opened
4 years ago
1
famSKAT stuck after loading kinship
#87
apampana
closed
4 years ago
3
segmentation fault using SKAT with large data set
#86
rjbohlender
opened
5 years ago
1
results for cmcWald
#85
apampana
closed
4 years ago
3
Specify snp weight in grouping test
#84
wavefancy
opened
5 years ago
1
Specify specific variants in group file
#83
wavefancy
opened
5 years ago
2
output file explanation
#82
sbaheti
closed
4 years ago
1
Running rvtests with 1000 Genomes Project Phase 3 dataset
#81
NemanjaV
opened
5 years ago
1
rare variant analysis
#80
sbaheti
opened
5 years ago
14
suppy vcf2kinship with known pedigree information (--ped has no effect)
#79
scogi
closed
4 years ago
3
Failure to load kinship file made with vcf2kinship
#78
LindaETV
opened
5 years ago
1
Segmentation fault in rvtest (--single option)
#77
Shabs86
closed
5 years ago
4
Segmentation fault for score test (v20181226)
#76
winkusch
opened
5 years ago
1
--hide-covar does not work with firth test (v20181226)
#75
winkusch
closed
5 years ago
1
Change in versioning scheme intentional?
#74
epruesse
opened
5 years ago
1
Fan bare
#73
zhanxw
closed
5 years ago
0
bgen logistic regression gives wrong results
#72
winkusch
opened
5 years ago
5
Add phenotype sample filter "--keep"
#71
zx8754
closed
5 years ago
1
MadsonBrowning Pvalue is zero
#70
zx8754
closed
5 years ago
3
Is using setFile slower than geneFile?
#69
zx8754
opened
5 years ago
3
Permutations on SKAT-O
#68
djenikappel
opened
5 years ago
3
Typo, extra tab on the header: MadsonBrowning
#67
zx8754
opened
5 years ago
1
Filter output: --pfilter
#66
zx8754
opened
5 years ago
1
Integration failed with a error [ exceeded max number of iterations ]
#65
zx8754
closed
5 years ago
1
Typo in log file
#64
zx8754
closed
5 years ago
2
Add --version option to display version of rvtests
#63
marcora
closed
5 years ago
1
--rangeList is not subsetting for skato
#62
zx8754
opened
5 years ago
1
Grouping rare variants
#61
elise625
opened
5 years ago
2
Problem with N_INFORMATIVE after --impute drop
#60
BEFH
opened
6 years ago
1
Segmentation fault - burden test skato when run with option --outputRaw
#59
manu148
closed
5 years ago
4
What tabix options should I use to create the same tbi file as made by rvtest?
#58
StripelessWatermelon
opened
6 years ago
2
strange behaviour of --numThreads
#57
dkainer
closed
5 years ago
7
test multiple phenotypes in one command line
#56
jielab
opened
6 years ago
1
BGEN file does not work
#55
jielab
opened
6 years ago
5
installation issue
#54
gpcr
opened
6 years ago
1
bgen -recessive analysis - issue with range list
#53
cgrace1978
opened
6 years ago
0
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