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zhanxw
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rvtests
Rare variant test software for next generation sequencing data
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exactCMC N00 is less than N10 and N01 < N11
#153
samreenzafer
opened
4 months ago
0
--setFile how are overlapping regions handled?
#152
samreenzafer
opened
4 months ago
0
Segmentation fault while running --meta cov
#151
samreenzafer
opened
6 months ago
0
Order of Operations when using Frequency filter and Sample exclusion.
#150
samreenzafer
opened
7 months ago
0
NAs in assoc file
#149
lubapardo
opened
11 months ago
0
Segmentaion fault - rvtests using RStudio Workbench
#148
danishdyna
closed
1 year ago
1
Output explanation
#147
alexandransmith
opened
1 year ago
0
Output MAC or MAF for SKAT-O kernel test
#146
wilsonava
opened
1 year ago
0
Runtime Bug Chromosome 2 UKB WES
#145
wilsonava
opened
1 year ago
0
SKAT/CMC: Missing covariates are not imputed, but dropped
#144
katyaorlova
opened
1 year ago
2
Incorrect phenotype file format [ m2_pheno.pheno ], check column number
#143
wilsonava
closed
1 year ago
0
Some permutated p-values >1
#142
UrsaGitHub
opened
1 year ago
0
No variants found in gene
#141
jzollner
opened
2 years ago
0
Rvtests SKAT,SKATO keeps on running after removing one gene from '--gene' list
#140
ChakrabortyShreya
opened
2 years ago
0
Reference allele output from rvtest
#139
JuRaGa
opened
2 years ago
0
What/where is --outputRaw collapsed genotype?
#138
aejen
opened
2 years ago
0
Instructions to build without all of the third parties ?
#136
mboisson
closed
2 years ago
5
fix sqrt(VarQ) when VarQ<=0
#135
lindenb
opened
2 years ago
1
What do the duplicated lines in burden test with covariates output mean ?
#134
marlenebrs
opened
2 years ago
0
SKATO: rvtest frozen/stalled (3 variants) (minimal example provided)
#133
lindenb
opened
2 years ago
1
User-specified weight per variant
#132
ChristianDina
opened
2 years ago
0
FAMILY BASED STUDY Fam Score
#131
medinacarolina
opened
2 years ago
0
'setFile' format 0-based or 1-based ? refFlat: only exons ?
#130
lindenb
opened
2 years ago
1
Correct the Command in the README
#129
michael-grace
opened
2 years ago
0
CHrX warning
#128
medinacarolina
opened
2 years ago
0
Rvtests SKAT-O output
#127
anna-321
opened
2 years ago
0
Job run time
#126
SamiFarashi
opened
3 years ago
0
License that applies to rvtests?
#125
heatherkellyucl
opened
3 years ago
1
Support non-human variant analysis?
#124
yige-luo
opened
3 years ago
0
Segmentation fault in multiallelic SKAT analysis
#123
Tijs-dot
opened
3 years ago
1
Wrong VCF header
#122
JuRaGa
opened
3 years ago
0
Effect in single variant analysis?
#121
Sandyyy123
opened
3 years ago
0
Meaning of the p-values columns and repeated variants in the single variant test
#120
MargheritaSq
opened
3 years ago
0
Segmentation fault core dumped
#119
r-blanchet
opened
3 years ago
0
Annotation and --annoType filter
#118
dianacornejo
opened
3 years ago
0
Compilation errors
#117
Jiasong-Duan
opened
3 years ago
0
Meta analysis tests for burden units
#116
aschluter
opened
3 years ago
0
Fix build: Eigen has moved, and vcfUtils Makefile is referencing a file that does not exist
#115
pettyalex
opened
3 years ago
0
installation fault
#114
flapa86
opened
3 years ago
4
vcf2kinship support bgen input or not?
#113
Shicheng-Guo
opened
3 years ago
0
rvtest genebased association
#112
Jiafeng-Li-leon
opened
3 years ago
0
kinship binary trait
#111
medinacarolina
opened
3 years ago
0
SKAT test for rare copy number variation
#110
xysj1989
opened
3 years ago
0
Update eigen's URL
#109
lelimat
opened
3 years ago
0
"eigen" package not available on bitbucket
#108
lelimat
closed
3 years ago
2
Dose the result have a difference between Rvtest and R SKAT package?
#107
jeong2624
opened
4 years ago
0
Fix logger typo for FLAG_siteMACMin.
#106
koido
opened
4 years ago
0
WARN: Failed to load spectral decomposition results of the kinship matrix (.xHemi.eigen file is incorrectly reused across independent runs of rvtests)
#105
dpanyard
opened
4 years ago
13
Empty string in phenotype file not handled as a missing value
#104
dpanyard
opened
4 years ago
0
How to hide the covariate results from the output from SKAT and Burden test
#103
suraj86nong
opened
4 years ago
1
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