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zhanxw
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rvtests
Rare variant test software for next generation sequencing data
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Allele frequency column does not match N_REF,N_HET,N_ALT column
#52
sgrosche
opened
6 years ago
1
Pvalue shows "-nan" in output of gene level association test
#51
ppjeep
opened
6 years ago
3
Output specification
#50
bibb
opened
6 years ago
8
SnpEff annotated VCF
#49
Thatguy027
opened
6 years ago
1
Segmentation fault with condition option
#48
jgmayer67
opened
6 years ago
4
Fixed typo
#47
SteadyLight
closed
6 years ago
0
BGEN format on UK Biobank data does not work properly
#46
jielab
opened
6 years ago
1
Cox regression in RVTest for time to even analysis
#45
AniketMishra
opened
6 years ago
0
For gene level models, do they work with rare variants only (i.e., is it required to set --freqUpper 0.05)?
#44
ppjeep
opened
6 years ago
2
AF column in results and HWE
#43
medinacarolina
opened
6 years ago
0
bgen utilities in executable binary files
#42
ppjeep
opened
6 years ago
0
"unparsed option" when trying to use *bgen file in version 20171010
#41
cerulean10
closed
5 years ago
1
What is the file format of gene range file?
#40
TimingSpace
closed
6 years ago
1
could not specify multiple phenotypes.
#39
jielab
opened
6 years ago
3
Segmentation fault when reading BGEN file
#38
jielab
opened
6 years ago
6
Problem using the --meta bolt,boltCov option
#37
djthompson1
closed
6 years ago
1
Missing and unexpected column when running chrX analysis.
#36
zishang30
opened
7 years ago
0
Extra column Kinship matrix
#35
medinacarolina
opened
7 years ago
7
AF reported as 0 for all variants with FamScore Test
#34
youngh11
closed
7 years ago
3
std::logic_error when generating kinship matrix
#33
MostPJ
closed
7 years ago
16
gsl: fsolver.c:126: ERROR: endpoints do not enclose a minimum
#32
chesi
closed
7 years ago
9
LOG message goes to standard error
#31
jielab
opened
7 years ago
7
wald single test bug?
#30
ppjeep
closed
7 years ago
8
Missing col error in version: 20170228
#29
SailajaVeda
closed
7 years ago
6
VCF Line does not have correct column number and exsiting!
#28
zishang30
closed
7 years ago
3
still negative AF, for binary trait
#27
jielab
opened
7 years ago
6
unbelievable slow speed for --siteFile
#26
jielab
opened
7 years ago
4
extreme slow speed for "--covar"
#25
jielab
closed
7 years ago
3
no variant name in *.SingleScore.assoc file
#24
jielab
closed
7 years ago
2
Segmentation fault?? Can not run rvtest!!
#23
zishang30
closed
7 years ago
13
VCF header have LESS people than VCF content for kinshipmatrix!!--Why this happen??
#22
zishang30
closed
7 years ago
10
Empty individual column - very strange!!
#21
jielab
opened
7 years ago
3
thread count for rvtest
#20
CanWood
closed
7 years ago
3
huge EFFECTS difference between SCORE and WALD test on binary trait
#19
jielab
closed
7 years ago
1
--siteFile does not work ...
#18
jielab
closed
7 years ago
3
AF issue still not fixed in the April 14 version
#17
jielab
closed
7 years ago
3
Error while running --meta cov
#16
drveera
closed
7 years ago
1
AF is incorrect in SingleScore.assoc file
#15
jielab
closed
7 years ago
6
SNP ID/rsID in output
#14
oyhel
closed
7 years ago
1
vcf2kinship not finding samples in pedigree
#13
padlocke11180
closed
7 years ago
6
VT analytic
#12
Rosadosa
opened
7 years ago
3
frequency rvtest single variant analysis
#11
medinacarolina
opened
7 years ago
2
Rvtests does not calculate statistics for all markers
#10
SarahGrosche
closed
7 years ago
0
Allele frequency and covariate outputs
#9
medinacarolina
closed
7 years ago
4
Core-dump possibly due to out of memory
#8
misshie
opened
8 years ago
1
impute drop cause Segmentation fault (core dumped)
#7
ChinaOK
closed
7 years ago
2
bed bim fam as inputs
#6
gpcr
opened
8 years ago
1
Empirical Pvalue
#5
dheerajbobbili
opened
8 years ago
0
output of single variant association results
#4
dajiangliu
closed
8 years ago
3
compile fails in ubuntu 14.04
#3
mjsduncan
closed
9 years ago
9
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