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Hi, I'm really excited about using assigner, but I keep getting an error when trying to run it. It seems to create 'fst.ranked_*.tsv' and 'assignment_data_iteration_*_markers_10_no_imputation.txt" fil…
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This will inevitably include an NGS intro, handling sequence data, and basic bioinformatics (e.g. BLAST). **Focus on species diversity through metabarcoding.**
- [ ] 27/11, I-IV, Introduction to the …
rvosa updated
7 years ago
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These are some collections to typos that I found during the review. I will reply to this thread if I find more. For now here are the list:
* `Since there are part of the Sequana` [docs, section 2.4…
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With my data, in the annotation output I found that ~5% of sequences labeled productive had an inferred naive sequence with a stop in the cdr3 region. Is this a bug or a feature?
```
> d.test2$seqs.a…
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I've followed the advice in #388 in order to install a version of CGAT that contains `bed2psl.py`.
curl -O https://raw.githubusercontent.com/CGATOxford/cgat/master/install-CGAT-tools.sh ;
…
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Hi,
I am having troubles executing the test run. I have installed everything and it was complete without errors. I have all the tools installed.
The first problem I encountered was that tophat i…
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Tim and Nils;
Thanks for all the recent work supporting duplex reads. I've been working on adding support for this into bcbio and updated to the latest development version to get the duplex fixes in …
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Open Debian Issues:
- [x] CPU architectures
- [x] amd64
- [x] arm64
- [x] armel : out of memory while building apps, disabled ~~WONTFIX because of GCC BUG: https://gcc.gnu.org/bugzilla/sho…
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Hello,
I am trying to use the assignment_ngs function on a genind object and receiving an error message.
# Read in genepop file and save as genind object
my_data
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Hi Phil,
I was wondering if you could add HOMER (Hypergeometric Optimization of Motif EnRichment) to MultiQC. HOMER a suite of tools for motif discovery (http://homer.ucsd.edu/homer/) and while HOM…