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we working on an HPC without root and network and I often get the following message, does this mean that my cache calls are failing.
we using the singularity method of task execution
```
cromwell-s…
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Jobs from the job composer do not seem to have the same environment as jobs submitted from the command line in an ssh session. The two most recent tickets are INC0357151 and INC0356547. There is als…
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It looks like this polls `squeue` every second:
https://github.com/mil-ad/stui/blob/978afa56e4666c2a4338302f16105de47cf90ac5/stui/backend.py#L157-L165
However, [ComputeCanada guidelines](https:/…
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Hi Carl,
I have some datasets with > 5 Million SNPs (but < 500 samples and 1 phenotype). The run with single_snp takes more then 8 hours. Is there any way to speed up things?
Thanks
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Hello,
we prepared some scripts with a README to help you to start with the cluster.
### step1:
- read the quick start guide available here: https://ifb-elixirfr.gitlab.io/cluster/doc/quick-sta…
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# Quality Control
I generate raw-samples.txt which has the sample_name, R1 and R2 as columns.
```
# Get R1 and R2
ls 00-RAW/ | tr " " "\n" | paste - - > doc/tmp.r1_r2.txt
# Get sample names
…
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When a build fails, it would be useful to be able to provide access to the whole job working directory, which includes the job output file, but also the tarball of the temporary directory that can be …
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**[Original report](https://bitbucket.org/glotzer/signac-flow/issue/3) by Carl Simon Adorf (Bitbucket: [csadorf](https://bitbucket.org/csadorf), GitHub: [csadorf](https://github.com/csadorf)).**
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Hey, @jelmerp! Sorry for being a bit late. I was thrown off by having to create a new repository due to issues with pushing to the last one.
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The GPU codes were developed in CUDA 11, which is the version that should be loaded (e.g. via `module` command on an HPC cluster). Some cluster is default to version 12 now. Thus, this information sho…