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fastlmm
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FaST-LMM
Python version of Factored Spectrally Transformed Linear Mixed Models
https://fastlmm.github.io/
Apache License 2.0
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ValueError: No individual observed for the SNP
#53
AbestSG
closed
1 month ago
2
synthetic dataset documentation
#52
snowformatics
opened
1 month ago
1
single_snp with large number of SNPs
#51
snowformatics
opened
2 months ago
5
using only one chromosome
#50
snowformatics
closed
2 months ago
2
Kinship
#49
snowformatics
closed
2 months ago
9
Error in plotp.py: 'Legend' object has no attribute 'legendHandles'
#48
vb-iman
opened
3 months ago
1
q-values in single_snp() output?
#47
Jorge-Hernansanz
closed
3 months ago
2
how to calculate phenotypic variance explained
#46
carrot881216
closed
3 months ago
1
Using FaST-LMM single_snp() in a cluster server
#45
Jorge-Hernansanz
closed
3 months ago
5
Calculate heritability
#44
snowformatics
closed
3 months ago
2
Filtering on allele frequency and outputting allele frequency in result
#43
vb-iman
closed
4 months ago
3
warpedlmm installation
#42
asifzubair
closed
4 months ago
2
TypeError in flutil.manhattan_plot()
#41
vb-iman
closed
3 months ago
7
AttributeError; scipy vs numpy in utils
#40
vb-iman
closed
3 months ago
6
PValue Output Format
#39
snowformatics
closed
4 months ago
16
Remove links to nbviewer.org (notebooks don't need it anymore)
#38
snowformatics
closed
3 months ago
13
Unable to run with multiple phenotypic traits together
#37
jefflllyyy
closed
4 months ago
1
[Feature Request] Allow string as chromosom names
#36
snowformatics
closed
1 year ago
4
ValueError: No individual observed for the SNP
#35
snowformatics
closed
1 year ago
4
FloatingPointError: divide by zero encountered in true_divide
#34
zhaouu
closed
1 year ago
3
Replacement for fastlmm.util.stats.quadform?
#33
yyang-peko
closed
1 year ago
1
Support cbgen>=1.0.1
#32
ofrei
closed
3 months ago
4
Ill-formed BED file. BED file header is incorrect or length is wrong
#31
snowformatics
closed
1 year ago
4
Run without PLINK format
#30
snowformatics
closed
1 year ago
2
epistatis test error
#29
snowformatics
closed
1 year ago
8
Hapmap format
#28
snowformatics
closed
2 years ago
2
Understanding SNPWeight Column and Conversion to Effect Size Estimation
#27
CSGallagher
closed
1 year ago
4
When number of multiple phenotypes is large, run them in batches.
#26
CarlKCarlK
opened
2 years ago
0
Scaling of beta estimates with case control analyses
#25
CSGallagher
closed
2 years ago
2
How to tell which allele is used as reference for effect size estimates?
#24
CSGallagher
closed
2 years ago
2
Some tests are skipped due to duplicate names fix
#23
code-review-doctor
closed
2 years ago
1
Some tests are skipped due to duplicate names
#22
code-review-doctor
closed
1 year ago
1
Scipy.dot and scipy.log etc are deprecated. Replace with numpy
#21
CarlKCarlK
closed
1 year ago
0
Issue with multiple phenotype files
#20
koa-planedin
closed
3 years ago
6
Fatal Error : Expected a Chromosome in the form of an integer or a string X, Y, XY, or MT in file
#19
tinameiring
closed
1 year ago
1
Installing fast-lmm on CentOS 7
#18
snowformatics
closed
1 year ago
3
ValueError: No objects to concatenate
#17
snowformatics
closed
3 years ago
3
Epistatic interaction coefficient and error
#16
edinburgh-biomedical-ai
closed
3 months ago
5
Added color and ax options to manhattan_plot in util.py
#15
lucasmiranda42
opened
3 years ago
0
Result of single_snp analysis has fewer SNPs than input
#14
lucasmiranda42
closed
3 years ago
3
fastlmm doesn't work with newest version of pip
#13
CarlKCarlK
closed
3 years ago
0
LMM.getPosteriorWeights() returns inconsitent results
#12
remomomo
closed
3 years ago
3
GenDist is NaN after running single_snp analysis
#11
lucasmiranda42
closed
3 years ago
4
Why did Bed.pos switch from int to float?
#10
remomomo
closed
3 years ago
1
SNPs from different replicons should be in one input file or separate?
#9
limin321
closed
3 years ago
3
Installation problems on Windwos10
#8
snowformatics
closed
3 years ago
7
Adding ubuntu docker build + instructions
#7
eric-czech
opened
4 years ago
0
fastlmm.association import fails || 86_64-linux-gnu.so: undefined symbol: mkl_serv_inspector_loaded
#6
complexgenome
closed
3 years ago
4
How to generate the input file
#5
panruiqing
closed
3 years ago
5
How fastlmm deal with "NA" in covariate file?
#4
baolichang
closed
4 years ago
3
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