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Starting to think about the config system YAML.
``` yaml
#### General Settings ####
settings: # location of system level settings
title: My Very Cool Project
Author: Bob
data: /data/bob/…
jfear updated
8 years ago
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It looks like several of the Workflow fields return a timestamp in the json, and I don't see specific formatting so I think with flask's jsonify it might come out like this
```
with app.app_contex…
vsoch updated
3 years ago
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## Describe the feature you'd like to see
Add codecov coverage for verifying the ratio of code that is actually tested by the CI
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I would like to implement a pipeline similar to [How to annoy your co-authors: a Gitlab CI pipeline for LaTeX](https://blog.martisak.se/2020/05/11/gitlab-ci-latex-pipeline/) where each rule may _optio…
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Hi! I noticed the `High throughput` page in CSC docs (https://docs.csc.fi/computing/running/throughput/), and I have some comments on the properties of HyperQueue (I'm one of the HQ developers, as a d…
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here is my command :
snakemake -s Snakefile_S1.py --cluster "sbatch -N 1 -n {threads} -p node2 --mem-per-cpu=4000" --latency-wait 60 --cores 20
I want to limit the cores 150 CPUs for my Snakefi…
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```
Activating singularity image /vf/users/guibletwm/charlietest/charlie/.snakemake/singularity/85508a5ad215e06ac7e60750d9a291aa.simg
+ cd /vf/users/guibletwm/charlietest/charlie/ref
+ samtools fai…
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This is a follow-up from https://github.com/dieterich-lab/single-cell-nanopore/issues/11
I started to work on minor improvements and small fixes on a dev branch. The biggest motivation is to reduce…
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The following error occurs when running CaImAn in AWS ECS environment.
Countermeasures are needed.
```
ERROR - smk_status_logger.py -
{'level': 'debug', 'msg': 'Full Traceback (most recent call last)…
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[Transferring issue from bitbucket.](https://bitbucket.org/snakemake/snakemake-wrappers/issues/25/singularity-recipe-for-wrappers)
Adrien Leger:
> Conda env files are a great way to easily deploy …