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lcdb
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lcdb-workflows
DEPRECATED. Please see https://github.com/lcdb/lcdb-wf
MIT License
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Reporting Dummy Pull Request
#43
jfear
opened
7 years ago
0
Updates dm6 download URL from current to FB2016_03
#42
jfear
closed
7 years ago
5
kallisto workflow
#41
daler
closed
8 years ago
0
Mapping workflow regex
#40
jfear
closed
8 years ago
2
Docs setup
#39
daler
closed
8 years ago
2
Cluster config
#38
daler
closed
8 years ago
0
Changes zcat to gunzip -c for OSX compatability.
#37
jfear
closed
8 years ago
2
References update 2
#36
daler
closed
8 years ago
8
References update
#35
daler
closed
8 years ago
0
Mapping workflow
#34
daler
closed
8 years ago
5
Feature counts request
#33
MediciPrime
closed
8 years ago
0
QC workflow
#32
daler
closed
8 years ago
0
Dupradar fixes
#31
daler
closed
8 years ago
0
updates to testing framework
#30
daler
closed
8 years ago
0
fix samtools view wrapper so it accepts arbitrary params
#29
daler
closed
8 years ago
0
Dup radar request
#28
MediciPrime
closed
8 years ago
0
New demo branch
#27
daler
closed
8 years ago
0
Picard clean
#26
jfear
closed
8 years ago
0
Bowtie2 clean
#25
jfear
closed
8 years ago
1
Preseq request
#24
MediciPrime
closed
8 years ago
1
Preseq request
#23
MediciPrime
closed
8 years ago
1
edits/updates to skeleton
#22
daler
closed
8 years ago
0
Refactor testing
#21
daler
closed
8 years ago
0
add fastq_screen wrapper
#20
daler
closed
8 years ago
0
Testing
#19
MediciPrime
closed
8 years ago
0
Working Preseq
#18
MediciPrime
closed
8 years ago
1
hisat2 wrapper
#17
daler
closed
8 years ago
0
schema and references
#16
daler
closed
8 years ago
0
RSeQC has many tools...which ones do we focus on?
#15
MediciPrime
closed
5 years ago
4
Images for RSeQC README.md
#14
MediciPrime
closed
5 years ago
2
use lcdb-workflows docker container
#13
daler
closed
8 years ago
0
schema validation
#12
daler
closed
8 years ago
0
multiqc uid not found in docker tests
#11
jfear
opened
8 years ago
5
[WIP] config as PR for discussion
#10
daler
opened
8 years ago
0
Config System YAML
#9
jfear
opened
8 years ago
4
the zen of workflows
#8
daler
opened
8 years ago
3
Rules, Workflows oh my!
#7
jfear
opened
8 years ago
1
How to prep indexes, annotations, etc
#6
daler
opened
8 years ago
2
Add multiqc
#5
daler
closed
8 years ago
0
Add cutadapt
#4
daler
closed
8 years ago
0
add fastqc
#3
daler
closed
8 years ago
0
MultiQC
#2
jfear
opened
8 years ago
3
permission denied in test folder
#1
jfear
opened
8 years ago
2