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Hello Developers,
I have been utilizing yahs for Hi-C data processing followed by Juicer's preprocessing pipeline. My command for running yahs was:
```bash
yahs /NGS/Fungi/Rc/juicer/references/…
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Hi Developers,
Thanks for putting up a great pipeline. I am trying to create alignment bam files (locally at hms outside broad) from the newly published [paper](https://www.nature.com/articles/s415…
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Hi,
I'm starting to run NIPTeR but there're errors after running this command..
> control_group
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Hello rahvis,
I am wondering if it is currently possible to add new bam files to an existing samchain ?
I tried and it says :
```
--CHAIN CREATION--
Could not create chain (it probably alr…
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sambamba version: 0.7.1, downloaded binary from release's page and uncompress for using.
```shell
LSB Version: core-2.0-amd64:core-2.0-noarch:core-3.0-amd64:core-3.0-noarch:core-3.1-amd64:core-…
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Dear scTE team,
I'm encountering a problem regarding the CR field in input bam files. In my bam files, corrected barcodes are stored in CB, while the uncorrected barcodes are in CR. A line of bam f…
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I noticed that on some of the test data we use for transrate, I occasionally see a run where the number of alignments in the SNAP output BAM file is much lower than what it should be.
The input datas…
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Current version looks like:
```
flowr run x=bam_mutect tumor_bam=tumor.bam normal_bam=normal.bam tumor_name=TCGA-00-ABCD-01 normal_name=TCGA-00-ABCD-10 out_prefix=tumor_normal platform=local execute=…
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Hi velocyto team,
I ran 10x cell ranger count output files with the following commend. But no loom. file that supposed to be generated.
velocyto run10x /project/wilsonp/linda/319-5_prime /projec…
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**Test Environment**
- Platform: Wukong
- ROM Release: 920408
- Core Commit: cbd9e85
**Describe the bug**
Some D64 disk images either show an empty directory, or produce an illegal track/sec…