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Hi Matt,
I am currently working on a qsiprep implementation with the datalad fairly big processing workflow. I use the containerized qsiprep version 0.14.2 from dockerhub.
I face an error with d…
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At the moment we are implementing transformations from `baseline` using synthetic data only for a *subset* of fields (the subset depends on the target CDM table), so the table is quite small. Later on…
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Hi,
We are trying to impute UK BioBank bed data but we found that the bigsnpr only consumed 3-5% CPU and very few memory. Our machine has 44 physical cores and over 300G memory. Is this a known i…
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Hello,
I have had several issues that mimic the error (below) when trying to run GENESIS on a particular chromosome. It says there's some issue with an if statement, as stated below. In addition, i…
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The dataset is: git@data.neuro.polymtl.ca:datasets/uk-biobank-processed
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I'm getting some strange results with my own UK biobank + Biobank Japan data (the tutorial worked fine), where there are variants with extremely low p-values. I'm not sure what's causing this - most o…
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Among most occurring measurement codes are many read codes where the trailing '00's have been dropped, see table 9 in CDMInspection.
ROW_NUM | SOURCE V…
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Hello,
I have .cwa file I need to parse and store in SQLite DB. For this, I download the cwa.py script. I passed the input file it creates the SQLite DB file but did not store any values.
When I che…
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@Jegelewicz has tentatively agreed to convene a task group around the subject matter of MaterialSample as a result of discussions in issue #314. One of the first orders of business is to figure out wh…
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Hi,
I’m working with the summary statistics of a [GWAS on Parkinson’s disease](https://pubmed.ncbi.nlm.nih.gov/31701892/). In this meta-analysis, they included true cases (individuals with Parkinso…