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EHDEN
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ETL-UK-Biobank
ETL UK-Biobank
https://ehden.github.io/ETL-UK-Biobank/
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Added distributable version of Delphyne
#364
spiros
closed
1 year ago
0
Duplicate visit_occurrence_ids for HES tables
#363
MaximMoinat
opened
2 years ago
0
Remove record_source_value from visit occurrence and visit detail mappings
#362
MaximMoinat
opened
2 years ago
0
typo fix
#361
spiros
closed
2 years ago
0
Fix 358
#360
SofiaMp
closed
2 years ago
0
Add mapping for field 3761 and 3627
#359
MaximMoinat
closed
2 years ago
0
ValueError columns expected but not found: ['40002-0.0'] in baseline_to_condition_occurrence
#358
MaximMoinat
closed
2 years ago
2
Entire ETL crashes when one transformation throws error
#357
MaximMoinat
closed
2 years ago
4
Death fields from baseline
#356
MaximMoinat
closed
2 years ago
9
Add two missing baseline age field mapping
#355
MaximMoinat
closed
2 years ago
0
Ignore dietary and register fields
#354
MaximMoinat
closed
2 years ago
0
Dietary questions use other instance ids - other dates
#353
MaximMoinat
closed
2 years ago
0
Allow one-to-many mappings in gp clinical and gp script
#352
MaximMoinat
closed
2 years ago
0
Document ctv3 mapping strategy (extraction from NHS migration)
#351
MaximMoinat
opened
2 years ago
0
gp_clinical one-to-many mapping
#350
MaximMoinat
closed
2 years ago
0
Issue #340
#349
SofiaMp
closed
2 years ago
0
skip X998 and X999 and make some exceptions that need a higher hierac…
#348
Anne0507
closed
2 years ago
0
Secondary death
#347
SofiaMp
closed
2 years ago
0
do not filter certain emis codes
#346
Anne0507
closed
2 years ago
1
CTV3 mappings
#345
MaximMoinat
closed
2 years ago
3
Improve icd10 mapping
#344
SofiaMp
closed
2 years ago
0
CTV3 mapping requires term id for exact mapping (inferring details on code level)
#343
MaximMoinat
opened
2 years ago
2
Add all discrete baseline fields (mapped and unmapped) in mapping files
#342
MaximMoinat
opened
2 years ago
1
Add missing source frequencies for baseline fields
#341
MaximMoinat
closed
2 years ago
1
Add explicit postive COVID19 test from covid specimen
#340
MaximMoinat
closed
2 years ago
1
Do not ignore EMIS records with value -9999999 or -9000099
#339
MaximMoinat
closed
2 years ago
1
Remove baseline mapping for HES procedures
#338
MaximMoinat
closed
2 years ago
1
OPCS3 Inpatient procedures are mapped twice
#337
MaximMoinat
closed
2 years ago
3
Tpp gp clinical docs
#336
Anne0507
closed
2 years ago
1
Check documentation of filter rules for tpp_gp_clinical
#335
MaximMoinat
closed
2 years ago
0
Add mapping for newly prioritised baseline fields
#334
MaximMoinat
closed
2 years ago
1
Source and OMOP counts for coded baseline fields differ
#333
MaximMoinat
opened
2 years ago
0
Contributory (secondary) causes of death: ICD10
#332
MaximMoinat
closed
2 years ago
1
Improve ICD10 mapping via higher ICD10 level
#331
MaximMoinat
closed
2 years ago
4
Improve CTV3 mapping with NHS-provided SNOMED mappings
#330
MaximMoinat
closed
2 years ago
5
Update covid19_emis_gp_clinical_to_stem.md
#329
MaximMoinat
closed
2 years ago
0
Add concept mapping for baseline fields (e.g. BMI measurement)
#328
MaximMoinat
closed
2 years ago
2
Include unapproved in STCM export
#327
MaximMoinat
closed
2 years ago
1
Unmapped condition code `M45X`
#326
MaximMoinat
closed
2 years ago
0
Add mapping for baseline variable Ejection Fraction
#325
MaximMoinat
opened
2 years ago
2
Filter out source codes for some codes that have three digits (meaning unknown or unspecified)
#324
Anne0507
closed
2 years ago
2
Stem table to drug exposure: use drug start if drug end date is empty
#323
MaximMoinat
closed
3 years ago
0
Empty end data for stem table to drug exposure
#322
MaximMoinat
closed
3 years ago
0
More descriptive error message when failed loading vocabulary
#321
MaximMoinat
closed
3 years ago
0
Release 1.4.0
#320
MaximMoinat
closed
3 years ago
0
Allow mapping of one baseline field to value_as_number and value_as_concept (and unit_concept)
#319
MaximMoinat
closed
3 years ago
0
Not all covid19_gp to measurement domain
#318
egarcialara
closed
3 years ago
0
Changes from partial run
#317
SofiaMp
closed
3 years ago
0
Merge changes from partial run branch into main
#316
MaximMoinat
closed
3 years ago
0
Ethon reflection 1: Are we missing people with Deep Venous Thrombosis (DVT)?
#315
MaximMoinat
closed
3 years ago
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