EHDEN ETL-UK-Biobank issues

EHDEN / ETL-UK-Biobank

ETL UK-Biobank

https://ehden.github.io/ETL-UK-Biobank/

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issues

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Added distributable version of Delphyne

#364 spiros closed 1 year ago
0
Duplicate visit_occurrence_ids for HES tables

#363 MaximMoinat opened 2 years ago
0
Remove record_source_value from visit occurrence and visit detail mappings

#362 MaximMoinat opened 2 years ago
0
typo fix

#361 spiros closed 2 years ago
0
Fix 358

#360 SofiaMp closed 2 years ago
0
Add mapping for field 3761 and 3627

#359 MaximMoinat closed 2 years ago
0
ValueError columns expected but not found: ['40002-0.0'] in baseline_to_condition_occurrence

#358 MaximMoinat closed 2 years ago
2
Entire ETL crashes when one transformation throws error

#357 MaximMoinat closed 2 years ago
4
Death fields from baseline

#356 MaximMoinat closed 2 years ago
9
Add two missing baseline age field mapping

#355 MaximMoinat closed 2 years ago
0
Ignore dietary and register fields

#354 MaximMoinat closed 2 years ago
0
Dietary questions use other instance ids - other dates

#353 MaximMoinat closed 2 years ago
0
Allow one-to-many mappings in gp clinical and gp script

#352 MaximMoinat closed 2 years ago
0
Document ctv3 mapping strategy (extraction from NHS migration)

#351 MaximMoinat opened 2 years ago
0
gp_clinical one-to-many mapping

#350 MaximMoinat closed 2 years ago
0
Issue #340

#349 SofiaMp closed 2 years ago
0
skip X998 and X999 and make some exceptions that need a higher hierac…

#348 Anne0507 closed 2 years ago
0
Secondary death

#347 SofiaMp closed 2 years ago
0
do not filter certain emis codes

#346 Anne0507 closed 2 years ago
1
CTV3 mappings

#345 MaximMoinat closed 2 years ago
3
Improve icd10 mapping

#344 SofiaMp closed 2 years ago
0
CTV3 mapping requires term id for exact mapping (inferring details on code level)

#343 MaximMoinat opened 2 years ago
2
Add all discrete baseline fields (mapped and unmapped) in mapping files

#342 MaximMoinat opened 2 years ago
1
Add missing source frequencies for baseline fields

#341 MaximMoinat closed 2 years ago
1
Add explicit postive COVID19 test from covid specimen

#340 MaximMoinat closed 2 years ago
1
Do not ignore EMIS records with value -9999999 or -9000099

#339 MaximMoinat closed 2 years ago
1
Remove baseline mapping for HES procedures

#338 MaximMoinat closed 2 years ago
1
OPCS3 Inpatient procedures are mapped twice

#337 MaximMoinat closed 2 years ago
3
Tpp gp clinical docs

#336 Anne0507 closed 2 years ago
1
Check documentation of filter rules for tpp_gp_clinical

#335 MaximMoinat closed 2 years ago
0
Add mapping for newly prioritised baseline fields

#334 MaximMoinat closed 2 years ago
1
Source and OMOP counts for coded baseline fields differ

#333 MaximMoinat opened 2 years ago
0
Contributory (secondary) causes of death: ICD10

#332 MaximMoinat closed 2 years ago
1
Improve ICD10 mapping via higher ICD10 level

#331 MaximMoinat closed 2 years ago
4
Improve CTV3 mapping with NHS-provided SNOMED mappings

#330 MaximMoinat closed 2 years ago
5
Update covid19_emis_gp_clinical_to_stem.md

#329 MaximMoinat closed 2 years ago
0
Add concept mapping for baseline fields (e.g. BMI measurement)

#328 MaximMoinat closed 2 years ago
2
Include unapproved in STCM export

#327 MaximMoinat closed 2 years ago
1
Unmapped condition code `M45X`

#326 MaximMoinat closed 2 years ago
0
Add mapping for baseline variable Ejection Fraction

#325 MaximMoinat opened 2 years ago
2
Filter out source codes for some codes that have three digits (meaning unknown or unspecified)

#324 Anne0507 closed 2 years ago
2
Stem table to drug exposure: use drug start if drug end date is empty

#323 MaximMoinat closed 3 years ago
0
Empty end data for stem table to drug exposure

#322 MaximMoinat closed 3 years ago
0
More descriptive error message when failed loading vocabulary

#321 MaximMoinat closed 3 years ago
0
Release 1.4.0

#320 MaximMoinat closed 3 years ago
0
Allow mapping of one baseline field to value_as_number and value_as_concept (and unit_concept)

#319 MaximMoinat closed 3 years ago
0
Not all covid19_gp to measurement domain

#318 egarcialara closed 3 years ago
0
Changes from partial run

#317 SofiaMp closed 3 years ago
0
Merge changes from partial run branch into main

#316 MaximMoinat closed 3 years ago
0
Ethon reflection 1: Are we missing people with Deep Venous Thrombosis (DVT)?

#315 MaximMoinat closed 3 years ago
10