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As discussed in #142, to facilitate evaluating predicted segmentation images, it would make sense to implement metrics that compare the predicted images with the ground truth in order to compare appro…
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Hello Radiomics community!
I have some questions regarding to dealing with negative intensity voxels.
I have brain tumor (glioma) MRI data set and it has been normalized relative to white matter…
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As almost everyone will know, HJ is in the hospital because of treatment on a brain tumor that was found earlier this month.
Even though we all work "distributed", a personal touch remains invaluab…
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Hi! I installed the HoneyBADGER on MacOS with R 3.5.0. Afterwards went though tutorial and everything worked fine. My main question: is the package suitable for 3' focused 10X data? Are there some set…
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Dear Keegan,
I am working on whole genome bisulfit seq data from 5 different brain tumor types and I would like to investigate what these tumors have in common and what distinguishes them.
Does 'dm…
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@MIC-DKFZ
Thank you for a great repo. The example works with 'hippocampus' image dataset, I am just wondering if you can provide an example with a moderately larger image, say BraTS 2018 or images li…
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Hey, could you please send the files which are mentioned in the below code
#%%
# catch all T1c.mha
create_data('/home/andy/Brain_tumor/BRATS2015/BRATS2015_Training/HGG/', '**/*Flair*.mha', …
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**Basic info form**
- [x] No need for First name, Last name and Organization textfields to have the label repeated within the field
![screen shot 2018-07-19 at 9 29 29 am](https://user-images.github…
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To do:
- [x] Create EFO:NEW 'intestinal disease' and map it to MONDO:0005020 'intestinal disease'
Subclass of 'digestive system disease'
"A disease that affects the small or large intestine."
MO…
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In the file MphConstants.java, the Map MALIGNANT_BRAIN_2007_CHART1 has duplicate key values of:
content.put("9392", "Embryonal tumors"); //Ependymoblastoma
content.put("9392", "Ependymal tumors"); /…