-
For reasons I'm not going to go into I'm not using R that comes with the conda installation of cnvkit.
For my own R installation I have my R packages in a location that's indicated in ~/.Rprofile,…
-
Hi, thanks for a great package!
I am having some issues when trying to perform runHomer for motif discovery across my clusters.
Here is the code I ran
motifs = runHomer(
CD8.sp[,idy.ls…
-
I tried to use neoflow by exampledata.But I get an error when I run neoflow_msms.nf
this is my code
`
./nextflow run ./neoflow-master/neoflow_msms.nf \
--ms /mnt/g/example_data/mgf \
--msms_par…
-
Implement filter options to select only
1. Atleast two types of nodes must be selected
2. Relation type feature implement later
3. Scoring filter
-
Hi, there
I've got to the point of DE expression analysis with ballgown, after creating ballgown object.
However after reviewing ballgown documentation I did not find any reference to use TPM inst…
-
When I was running:
df = prune2df(dbs, modules, MOTIF_ANNOTATIONS_FNAME, client_or_address = 'custom_multiprocessing', num_workers = 6)
on my Windwos laptop with 64G RAM and 16 threads i7 CPU
it …
-
As outlined in the book in chapter 7, interactions pose some difficulties to the standard mfp algorithm based on p-values.
In 7.4.1 it is suggested to use AIC or BIC instead. This should be documen…
-
I am able to run taxa.compare after formatting our dataset like your input data "taxtab.rm7". Thank you! But I can't find the input data for alpha.compare (alpha.rm) and pathway.compare (kegg.rm). Cou…
-
Regardless of dataset used.
This causes an error when running chipseeker_peakplot:
```
Command error:
Warning message:
package 'dplyr' was built under R version 4.3.2
GRanges object wit…
-
### Description of the bug
```
ERROR ~ Error executing process > 'NFCORE_QUANTMS:QUANTMS:TMT:ID:PSMRESCORING:PERCOLATOR (g00594_Prot_37_11)'
Caused by:
Process `NFCORE_QUANTMS:QUANTMS:TMT:ID:P…