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Dear GitHub Team,
I wanted to bring to your attention a discrepancy I noticed between the Trinity manual on GitHub and the version provided in the Metacentrum environment.
As a user of Metace…
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Hi,
(1) Are there intron sequences in the assembly result of Trinity without reference genome? I used the command (Trinity --left reads_1.fq.gz --right reads_2.fq.gz --seqType fq --CPU 2 --max_mem…
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Hi,
I'm getting a lot of these types of warnings. I don't quite get what's going on here.
```
Inputting BRAKER_jg3922.t1
Use of uninitialized value $type in concatenation (.) or string at /mnt…
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Dear Brian
I am getting the following error message at the very last step of trinotate to write the annotation report. Would you mind helping me out?
I am running the exact codes you have avialabl…
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Hi Brian,
I have aligned proteins to a reference genome using genomeThreader and I converted the GFF3 output in a GFF3 output with the following format:
[example_gth.txt](https://github.com/EVid…
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Hi Just a quick question I can;t seem to find an answer for.
I've got 16 libraries that are RF and 23 that are unstranded. I want to combine them all when doing a genome guided and/or unguided assemb…
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Hi, I'm trying to run trinity and I'm getting an error. I run the example before, so it seems the program is installed properly. I was trying to use paired end data and was having another problem. Th…
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Hi, I am new to programming and this is my first time posting an error like this, so if there is anything I forgot to include or did wrong please let me know.
I am performing a Trinity run which h…
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When not using pipe + forward, the nested prop with the same object schema is typed correctly. Example linked below, am I doing something wrong? With 0.0.30 api (from which I'm trying to migrate), th…
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I just now finally managed to get a build of Trinity 2.13.2 on a CentOS 7 machine with gcc-10.3.0 and pkgsrc-2021Q3 and some custom builds for the dependencies.
The final stumbling block was strang…
drhpc updated
2 years ago