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I noticed that the link to the data in .h5ad format in the code is no longer working. Do you still have these data saved? If so, could you please send me a copy? My email is [haoyu.wangg@gmail.com].Th…
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As discussed with @torfjelde on slack:
```julia
using Distributions, Turing
# LDA example -- copied over from
# https://github.com/TuringLang/Turing.jl/issues/668#issuecomment-1153124051
func…
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Encoding raw bytes only encodes partial data, stopping at a byte used as an "end" byte. I suspect this may be due to python 3+ not treating the bytes class as strings. All I know is that it's a bug fr…
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Hidden Markov Models are quite common in time series analysis. Since they involve discrete variables, HMC is not always appropriate, although we can still apply HMC for continuous parameters of an HMM…
yebai updated
2 months ago
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See output below. Maybe due to few number of frames compared to number of features.
-----------------
2019-02-08 12:24:38 utils-INFO: Rescaling feature importances ...
2019-02-08 12:24:38 filterin…
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**Describe the bug**
Setting `return_basis=True` in `BasisSmoother` leads to
```
AttributeError: 'BasisSmoother' object has no attribute 'hat_matrix_'
```
With a further look into the codes, I f…
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Dear authors,
I am running the scCDC (latest version), following your tutorial here https://htmlpreview.github.io/?https://github.com/ZJU-UoE-CCW-LAB/scCDC/blob/main/inst/doc/scCDC.html . I succeed…
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Fix the old scripts that need to be updated with new FIBERS 2.0 data.
https://github.com/lgragert/srtr-impute-pubsaf2306/blob/main/FIBERS_AgMM_summary_table.py
https://github.com/lgragert/srtr-impu…
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Hello, I have a single-cell transcript matrix (count/tpm) based on isoquant quantification. I used the count matrix for clustering and got 2 populations. You need to use isoformswithanalysis to analyz…