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kvittingseerup
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IsoformSwitchAnalyzeR
An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
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see NEWS
#250
chunxubioinfor
closed
1 week ago
0
example of dataset to use IsoformSwitchAnalyzeR
#249
jchelbling
closed
2 weeks ago
2
the output of importRdata is different?
#248
huawen-poppy
closed
3 weeks ago
1
Issue with importRdata() : the designMatrix is not full rank
#247
Tijs-dot
closed
3 weeks ago
3
AIUPred Compatibility
#246
NanoCoreUSA
opened
1 month ago
1
how is `iso_value` transformed to `IF` ?
#245
sparthib
opened
1 month ago
0
working with quantification tools that detect novel isoforms
#244
sparthib
opened
1 month ago
1
Visualization problem
#243
dawangran
opened
1 month ago
3
Import data for isoquant
#242
dawangran
opened
1 month ago
1
Version Discrepancy (GitHub vs. Bioconductor)
#241
NanoCoreUSA
closed
1 month ago
1
Joining multiple switch lists
#240
rugilemat
closed
1 month ago
0
The isoform_id in isoformFeatures and exons does not match
#239
mpage21
opened
1 month ago
2
Question about sva correction: why does IsoformSwitchAnalyzeR tell me I have a lot of SVs but sva actually disagrees?
#238
bozbezbozzel
opened
2 months ago
3
Issues with importRdata()
#237
R-relota
opened
2 months ago
1
Continous condition in design matrix?
#236
amkilpatrick
closed
1 month ago
3
CPAT3 compatibility
#235
rugilemat
opened
3 months ago
2
comparisonsToMake wiith 4four conditions
#234
rvermamsm
closed
3 months ago
2
Error with importIsoformExpression
#232
EntoErin
closed
4 months ago
1
IsoformSwitchAnalyzeR could not handle 394 wheat samples at one time
#230
sumageb
closed
4 months ago
3
(simpleError(msg, call)) : in using analyzeSwitchConsequences
#229
liscruk
closed
4 months ago
4
ImportRData Ensembl GTF annotation vs Matrix 0 Overlap
#228
Blondeau-Bidet
closed
4 months ago
9
pfam webserver output files incompatibility
#227
Blondeau-Bidet
closed
4 months ago
3
Warnning -- remove duplicates
#226
Annie133
closed
3 months ago
2
Question on importIsoformExpression()
#225
sparthib
closed
4 months ago
1
Import after STAR Alignment
#224
bassanio
closed
2 months ago
1
bug fix
#223
chunxubioinfor
closed
5 months ago
0
Question about reference genome and annotations
#222
sparthib
closed
2 months ago
1
Error in importRdata
#221
urwahnawaz
closed
2 months ago
2
see NEWS
#220
chunxubioinfor
closed
6 months ago
0
addORFfromGTF(): Error in in h(simpleError(msg, call))
#219
Catv97
closed
5 months ago
1
error: Error in H %*% t(dat) : non-conformable arguments
#218
sumitra20
closed
2 months ago
1
File import order impacts IsoformSwitchAfterDEXSeq
#217
LetiziaMe
closed
2 months ago
2
NetSurfP3 support
#216
chunxubioinfor
closed
7 months ago
0
How do I get exon inclusion level of alternative splicing events in each group
#215
orange-3711
closed
2 months ago
1
addORFfromGTF: cannot reconcile novel isoform IDs and ref gene annotations
#214
srisarya
closed
7 months ago
3
Error in vroom_(file, delim = delim %||% col_types$delim, col_names = col_names, : bad value
#213
ErickMUO
closed
7 months ago
2
isoformSwitchAnalysisCombined() error?
#212
marwa38
closed
10 months ago
2
Amino acid sequence files are too huge for PFAM scan (web version)
#211
ElvaWong
closed
11 months ago
0
Cannot import CPAT
#210
ElvaWong
closed
3 months ago
2
StringTie readLength when using long reads
#209
majdabdul
closed
7 months ago
2
Gene expression values using IsoformSwitchAnalyzeR
#208
Harshangda
closed
4 months ago
1
Gene position for eqtl analysis
#207
sumageb
closed
2 months ago
1
Error importing StringTie output
#206
majdabdul
closed
11 months ago
1
What are the SV values created in design matrix?
#205
ElvaWong
closed
2 months ago
3
UTR length
#204
lananh-ngn
closed
1 year ago
3
Doubt about splicing analysis
#203
RamonSLPS
opened
1 year ago
2
Problem in importRdata
#202
RamonSLPS
closed
1 year ago
8
Issue with the data?
#201
HAFSAKHAN9
closed
1 year ago
2
Issue using importRdata
#200
lauralh5
opened
1 year ago
2
issue with venn diagram scaling
#199
Harshangda
closed
1 year ago
1
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