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Auspice JSON configuration files support a `display_defaults.language` property to set the default language for the UI, [as documented here under the "Dataset (JSON) configurable defaults" section](ht…
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### Context
IQtree has a flag `--nt AUTO` that automatically sets the optimal number of threads.
Right now, when you use `augur tree` with `--threads auto`, augur uses _all_ threads, which is subo…
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Hi,
We've got the VizCon coming up a month from now, and we should start to build up the program. There'll be a welcome email coming up with some practical details as well, so this is for the content…
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**Current Behavior**
I tried downloading the phylo tree data but am getting an empty file. I get a file with data if I select a different time period, 6m or 2m.
**Expected behavior**
I tried down…
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**Current Behavior**
21K/L (Nextclade) is assigned to 21M and even 20A by Augur (today's build...).
**Expected behavior**
No discrepancy in clade assignment between Nextclade and Augur.
**How …
crl9k updated
2 years ago
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There may be a BA.5.2 sublineage with ORF1b:T1050N (C16616A), C27012T, C27513T, and E:T9I reverted to E:T9T (T26270C) first detected in Utah, USA.
A simple search finds a primary subtree with sever…
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新(有数据):https://ncov.dxy.cn/ncovh5/view/pneumonia
老(无数据):https://3g.dxy.cn/newh5/view/pneumonia
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Thanks for the helpful tool for mutation annotation of SARS-CoV-2.
I found a bug about alignment as shown in the pic.
![image](https://user-images.githubusercontent.com/10484714/156879814-209f9948-8…
BioWu updated
2 years ago
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In [`367cfe9`](https://github.com/lsy223622/xdncov-mirror-status/commit/367cfe948330a778d6bd665093404fb591910130
), Mirror-xmgg (https://myxdu.moefactory.com/ncov/doc) was **down**:
- HTTP code: 0
- R…
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### Context
`utils.read_metadata` and `io.read_metadata` have similar functionality in reading the metadata file.
1. `utils.read_metadata` reads the file in entirety and has an option to return …