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There was discussion on the samtools-dev mailing list about this last year:
http://sourceforge.net/p/samtools/mailman/message/30672431/
The main crux of the discussion there was to reuse the 16bit b…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Liubuntu/SeqSQC
Confirm the following by editing …
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I’ve used the cnvkit a few times, but this particular sample results in stating everything is at a loss.
This is the head T1.cns file produced by bcbio (i removed the gene column for clarity)
``…
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Please use the following bug reporting template to help produce actionable and reproducible issues. Please try to ensure that the reproduction is minimal so that the team can go through more bugs!
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zhwme updated
6 years ago
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I would like to start moving tutorials into a dedicated repo within galaxyproject. I was thinking of proceeding in the following sequence:
- [ ] Galaxy 101
- [ ] NGS-QC and mapping
- [ ] Variant …
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at time the sorting on resource search is slightly off
from website
![screen shot 2017-09-29 at 15 02 05](https://user-images.githubusercontent.com/6759267/31017011-5cba0966-a527-11e7-964c-1846e32…
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Hi Brad,
In the currently bcbio development version, I found the following error in the tumor-normal var calling for exome-seq data. It seems that the geno2mp.variants.tidy.vcf.gz annotation file is m…
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I was wondering if there are any plans to support GRCh38 as an additional assembly. The alternate loci and decoy sequences are likely to improve both variant calling and expression studies. I suppose …
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Hi there,
Thanks for cnvkit, what a great tool!
I've come across this error:
```
Relative log2 coverage of X chromosome: -0.820871 (assuming male)
Traceback (most recent call last):
File "/group/ngs…