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The constraint language is not fully supported in assertions.
```
Test case:
a ?
xor b 1
c ?
d ?
[never d after c ]
assert [all a1 : a | all b1 : a1.b | never b1.d after b1.c]
```
I…
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## [@gavinking] Problem
Parsing text is an extremely common task, and therefore it would be very nice to have a convenient syntax for creating little parsers from a grammar.
## Rant
The traditional …
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### Description of the bug
I get the following error when running quant.ms using an sdrf.tsv file:
Error in setnames(x, value) :
Can't assign 4 names to a 0 column data.table
Calls: OpenM…
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Dear einprot developers,
Currently einprot supports the following species
```
> getSupportedSpecies()
taxId species speciesCommon
1 10090 …
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preview_camera.py gives an error on line 9:
```
sys.exit(0)
```
where it says "Undefined name 'sys'". To fix this, put
```
import sys
```
at the beginning of preview_camera.py.
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After the new release of GDC made on March 29, 2022 the `GDCDownload()` function still works but the `GDCprepare()` function gives an error when the query is for RNA-Seq data. Here is the minimal cod…
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We need to be able to specify age at the time of phenotype capture, as well as DOB, or a range, or none. Many times age or DOB may not be known.
A few examples of each showing allowable values would…
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I use
`GenomicDataCommons::status() $commit [1] "e588f035feefee17f562b3a1bc2816c49a2b2b19" $data_release [1] "Data Release 16.0 - March 26, 2019" $status [1] "OK" $tag [1] "1.20.0" $version [1] 1`
…
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Hi,
I am working with the new CMI-MBC data and was using TCGABiolink for DEGs identification..
Now at step
```
dataDEGs