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nf-core
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quantms
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
https://nf-co.re/quantms
MIT License
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Add archiving notice to README
#152
mashehu
closed
4 months ago
2
MonoIsotopic mass for DIANN peptides with unknown AA
#151
ypriverol
closed
4 months ago
1
update dependecies
#150
ypriverol
closed
5 months ago
0
minor changes
#149
ypriverol
closed
5 months ago
0
1.3.0dev -> 1.3.0
#148
ypriverol
closed
5 months ago
0
quantms release 1.3.0
#147
ypriverol
closed
5 months ago
9
Dev PR for Release 1.3
#146
ypriverol
closed
5 months ago
4
Important! Template update for nf-core/tools v2.13.1
#145
nf-core-bot
closed
5 months ago
0
URGENT: pin nf-validation version
#144
nvnieuwk
closed
5 months ago
6
Important! Template update for nf-core/tools v2.13
#143
nf-core-bot
closed
6 months ago
0
DIA-NN Analysis parameters always trigger DDA-LFQ jobs?
#142
J-Burgess
closed
5 months ago
1
fix links to TOPP tools
#141
timosachsenberg
closed
5 months ago
1
Error fixed: file not found: 'MSGFPlus.jar' in google cloud
#140
kdommaraju
closed
5 months ago
1
Important! Template update for nf-core/tools v2.12
#139
nf-core-bot
closed
6 months ago
1
Usability tests/improvements
#138
jpfeuffer
closed
5 months ago
1
Disregard
#137
jspaezp
closed
8 months ago
3
error in reference_channel
#136
YoujiaMa
closed
7 months ago
1
Important! Template update for nf-core/tools v2.11
#135
nf-core-bot
closed
7 months ago
1
DIA test data SDRF file is missing required column
#134
harper357
closed
5 months ago
2
Some problem in learning quantms source code and OpenMS
#133
liuxiawei
closed
9 months ago
2
Dev reset
#132
fabianegli
closed
10 months ago
1
set release date and release version
#131
fabianegli
closed
10 months ago
1
Tests for the Python scripts in `./bin`
#130
fabianegli
closed
5 months ago
2
More fixes for type annotations
#129
fabianegli
closed
10 months ago
1
More fixes for type annotations
#128
fabianegli
closed
10 months ago
1
Mypy found issue fixes
#127
fabianegli
closed
10 months ago
1
use https instead of http for shields.io resources
#126
fabianegli
closed
10 months ago
1
Multiple changes before the release.
#125
ypriverol
closed
10 months ago
1
minor changes
#124
ypriverol
closed
10 months ago
1
commeting dev containers
#123
ypriverol
closed
10 months ago
1
update openms 3.1.0
#122
ypriverol
closed
10 months ago
1
Update diann_convert.py
#121
daichengxin
closed
10 months ago
1
Version 1.2 [PLEASE DO NOT MERGE YET]
#120
ypriverol
closed
10 months ago
9
minor changes.
#119
ypriverol
closed
10 months ago
1
Major PR for version 1.2 of quantms
#118
ypriverol
closed
10 months ago
6
update nextflow config to load openms dev container.
#117
ypriverol
closed
11 months ago
1
Important! Template update for nf-core/tools v2.10
#116
nf-core-bot
closed
11 months ago
1
Running this on Kubernetes or docker
#115
aupadh12
closed
5 months ago
1
Can't assign 4 names to a 0 column data.table MSStats errror
#114
Kimmiecc19
opened
12 months ago
5
SAGE run in a failing job
#113
ypriverol
closed
5 months ago
1
Document new sage option and move to a stable release for the adapter
#112
jpfeuffer
closed
5 months ago
1
Update main.nf
#111
ypriverol
closed
1 year ago
2
move to sdrf-pipelines version 0.0.23
#110
ypriverol
closed
1 year ago
0
fix some lint warnings
#109
jpfeuffer
closed
1 year ago
1
Merging template update 2.9
#108
jpfeuffer
closed
1 year ago
1
[DO NOT MERGE] Integration of template 2.9 into dev.
#107
ypriverol
closed
1 year ago
1
What is singularity_pull_docker_container?
#106
jpfeuffer
closed
1 year ago
3
[FEATURE] Add sage as a means for identification in DDA
#105
jpfeuffer
closed
1 year ago
6
[Discussion] modification specification propagation
#104
jspaezp
closed
5 months ago
3
Important! Template update for nf-core/tools v2.9
#103
nf-core-bot
closed
1 year ago
1
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