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Update as of COMBINE 2018
Nic is going to amend the language so that the description of our use of OM matches that of our use of PROV-O.
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When I browse to: https://hub.sd2e.org/user/sd2e/design/UWBF_16967/1
I get the following inscrutable error:
> TypeError: Cannot read property 'forEach' of undefined
The same thing seems to be h…
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The interaction types and participation roles are specified as recommended to come from certain branches of SBO (occurring entity relationship and participant role, respectively).
libSBOLj, however…
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Linking experimental data to samples and genetic designs is becoming critical to many synthetic biology projects.
We thus propose to add two new classes, Experiment and ExperimentalData, to enable …
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The URIs for DNA, RNA, and Protein sequences no longer dereference correctly:
http://www.chem.qmul.ac.uk/iubmb/misc/naseq.html
http://www.chem.qmul.ac.uk/iupac/AminoAcid/
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BioPAX uses PSI-MOD (ModificationFeature.modificationType=SequenceModificationVocabulary(PSI-MOD), ModificationFeature.featureLocation) to represent modified proteins. This has several issues
- BioPA…
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This SEP introduces terms and classes from the PROV-O ontology, allowing rich expression of provenance in SBOL.
Proposal document: https://github.com/SynBioDex/SEPs/blob/master/sep_009.md
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If you search for a part e.g. 'BBa_I757003', and then click on the first search result that shows up, it gives this error:
```
TypeError: templates/layouts/topLevel.jade:85
83| …
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Linking experimental data with SBOL designs is becoming critical to a number of important projects. Therefore this SEP introduces a Design-Build-Test data model for SBOL. [SEP 14 is here.](https://git…
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The code as it stands is not compatible with Python 2. It is easy to fix though.
How important is Python 2 compatibility?
* If it is important, verification of Python 2 compatibility should be b…