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**Github username:** @bauchibred
**Twitter username:** Bauchibred
**Submission hash (on-chain):** 0x570d46c9967f6e5db2b1de978fe824d67a408c3922d98effbf29cf8eb0202514
**Severity:** medium
**Descriptio…
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Hi Brian, I am trying to run trinity (first time using it) but after a week (more or less) I got the following error:
Process_cmd::process_cmd("salmon --no-version-check index -t Trinity.tmp.fa…
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We want to run some of the [Toil](https://toil.readthedocs.io/) interpreters for WDL and CWL with TES under Funnel. We run TES jobs by running Toil containers, which we then pass a command through to …
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Anyone seen this?
```
# 2020/05/14 17:01:48 warn xattr{var/lib/apt/lists/auxfiles} ignoring ENOTSUP on setxattr "user.rootlesscontainers"
# 2020/05/14 17:01:48 warn xattr{/scratch/users/oms/singu…
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```
(base) ubuntu@bio-xanthomonas:~/dentist-example$ snakemake --configfile=snakemake.yml --use-singularity --cores=all
Pre-fetching singularity image...
TypeError in line 45 of /home/djs217/de…
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The --pwd flag changes the initial working directory inside the container. Here I outline why I think it would be a good idea to include it:
I have a biobb workflow running biobb of pydock3 (These …
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**Describe the bug**
Can not import mujoco_py in singularity, error msg is "OSError: [Errno 30] Read-only file system: '/opt/mujoco-py/mujoco_py/cymj.c' ..." detailed error message is in the attached…
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Hello,
I have been unable to complete my ExOrthist run because of the following error:
ERROR : Unknown image format/type: /nfs/users/lserrano/lciampi/JuanRamon/Orthologies/ExOrthist/singularity…
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Randomly crashing with the following stacktrace:
`Unhandled Exception:
System.Collections.Generic.KeyNotFoundException: The given key was not present in the dictionary.
at System.Collections.Gener…
fkarg updated
5 years ago