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Hi.
Following advice given by Johannes Köster in [Add complex conditional file dependency
](https://bitbucket.org/snakemake/snakemake/issues/37/add-complex-conditional-file-dependency) on how to i…
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Hey @beardymcjohnface I think this is a good effort to make a package for that.
I had some similar scripts, even with doc test as it seems. https://github.com/metagenome-atlas/atlas/blob/master/a…
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Hi I installed zarp-cli when when ran on the paired-end fastq files, it initialized but then got the error on htsinfer.
Input command
`zarp ER14_1.fastq,ER14_2.fastq`
output error is attached:
…
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Hello,
I get an error when using plot_ma() with a wald-test object.
The error message is (I've translated it from german if it is not completely correct):
`Error in FUN(X[[i]], ...) : Object 'mea…
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The klue dependency appears to no longer be available. Do you have an alternative solution or a copy of the klue code? Thank you!
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**Snakemake version**
version -> 5.19.2
**Describe the bug**
When I am running my pipeline in snakemake with a slurm cluster the jobs
are killed due to memory limits but snakemake seems to be …
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**Snakemake version**
7.8.0
**Describe the bug**
The documentation of the `--touch` option says:
> `--touch` Touch output files (mark them up to date without really changing them) instead …
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After preparing the required input, the pipeline can't seem to find the specified files or output directory. I don't see in the log files whether or not my sample file is recognized. I am hoping that…
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I'm currently trying to set my thesis pipeline up in syw. Some of the code needs to be run on our cluster using slurm. I've implemented this by following #180 , but run into issues.
When running sy…
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Hey,
When I try to run the [demo using Snakemake rules,](https://github.com/wir963/HATCHet-demo) I get two errors.
The first error is for `count_alleles` and it basically complains that the ph…