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Yashwant Kumar reported:
```
During obiwrap step, I am getting following error for few samples however others are running well:
Processing: DVC4_1_1T_POS Found gaps: cut scantime-vector at 0.5585…
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Hi, as seen on https://travis-ci.org/sneumann/xcms/builds/265836488 ,
there is an excessive amount of Warnings from `trimMz_Spectrum()`
possibly in case of "mzmin==mzmax".
Yours, Steffen
```
App…
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This talk start from my personal experience on maintaining Open Source projects of others (Promote-MDN, GlotPress as example).
What are the common issues and problems of a newcomer for this role?
W…
Mte90 updated
6 years ago
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Report also the RSD across samples (all or per group) for each feature in the result table from `featureSummary`.
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The current `getEIC` method implementation in _xcms_ causes repeatedly problems (see issues #39 and #7). We should replace it with a more stable version (i.e. without the _buffer_).
The method should …
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In http://bioconductor.org/checkResults/devel/bioc-LATEST/xcms/malbec2-checksrc.html we get:
```
* checking dependencies in R code ... WARNING
'library' or 'require' call not declared from: ‘robust…
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Hi, I'm trying to debug a script that processes lipid samples. After peakpicking, 2 rounds of grouping and RT, the fillChrom peak step fails on a Ubuntu machine running MulticoreParam.
```
x_fille…
lee-t updated
6 years ago
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These are the main actionables I need to go through to have a first container based on galaxy-stable compose containers working with the helm deployment, as discussed in #2 . More to come here, as I g…
pcm32 updated
6 years ago
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Dear xcms devel,
running the latest stable xcms version I get the following error:
```
> xod traceback()
9: stop(.error_bplist(res))
8: bplapply(X, FUN, ..., BPREDO = BPREDO, BPPARAM = BPPAR…
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I'm not sure how feasible this is (or infact if it already exists); but now both `mzR` and `xcms3` are supporting SRM/MRM chromatograms is it possible to implement feature detection on `Chromatogram` …