-
During `HGEdge` construction, each edge is assigned a [std::string segment_name](https://github.com/TravelMapping/DataProcessing/blob/80f27243bf26579c53c6c7a215a5aeb22347317a/siteupdate/cplusplus/clas…
-
Hi there,
Excited to try this assembler with my HiFi reads, but I'm having trouble installing. Hoping someone can help me understand the following errors. I had no problem up until the `sh install.sh…
-
I've mapped a bam file to my MHC graph and used `vg call` to produce a vcf file of variants, but I'm not sure how to interpret it. Many positions have multiple entries, and some of the IDs are duplica…
-
Hello,
Installation of PECAT from github is throwing this error:
```
g++ -std=c++11 -Wall -O3 -D_FILE_OFFSET_BITS=64 -I. -I ../thirdparty/edlib/edlib/include -I ../thirdparty/ksw2 -c -MMD -MP …
-
### Steps to reproduce
Import http://stemcellcommons.org/sites/default/files/isa/isa_14911_906861.zip via /data_set_manager/import/isa-tab-form/
### Observed results
Import took about an hour in Vag…
-
Hi
Looks like a great tool I just wondered it will work with amplicon data. I seem to recall haplotype caller struggling with the lack of sequence diversity.
Thanks
Matt
mcgml updated
8 years ago
-
I am trying to augment a graph with the `.gam` file using the following command line.
```
vg augment -p -t 12 merged.vg x.gam -C -A x.aug.gam > x.aug.vg
```
The standard output is:
```
Reading i…
-
A miscellany of issues observed during client workshops
### Internal order
- [x] Internal order column widths in French
. It would be very helpful to have something like a …
-
Hi,
First, i have a little question on my training alignment result, is it normal ? I have this king of graph at step ~3k and the loss decreases and quality of audio is not so bad (a bit metallic) bu…