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mozack
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abra
Assembly Based ReAligner
MIT License
70
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java.lang.IllegalStateException
#46
lovelycatZ
opened
1 year ago
0
build issue
#45
BJWiley233
opened
3 years ago
0
abra2 error java.lang.NumberFormatException
#44
rimzaag
closed
5 years ago
3
No contigs assembled: no space left on device
#43
toddcreasy
closed
5 years ago
1
Is it possible to get the assembled contig?
#42
juberpatel
opened
6 years ago
2
Abra processes unique reads?
#41
ionox0
closed
6 years ago
2
Testing practices
#40
ionox0
closed
6 years ago
2
Abra will realign duplicates?
#39
ionox0
closed
6 years ago
5
Is YA tag deterministic?
#38
ionox0
closed
6 years ago
4
Change header in bam
#37
FedikZe
opened
6 years ago
1
Abra error
#36
yuhongning
opened
7 years ago
2
Created Dockerfile
#35
alanhoyle
opened
7 years ago
0
hidden dependency on bwa mem
#34
covingto
closed
7 years ago
2
Renamed assembler.c to assembler.cpp since it uses the C++ STL
#33
jlost
closed
7 years ago
0
xlC compatibility - C++ STL referenced in .c files
#32
jlost
closed
7 years ago
4
Amplicon data
#31
mcgml
opened
7 years ago
5
Replace System.out.println's with System.err.println's for streaming
#30
dnbaker
closed
7 years ago
1
[Request] Replace System.out.print* statements with System.err.print* for stream compatibility
#29
dnbaker
opened
8 years ago
3
Error in Cadabra
#28
GKerdivel
opened
8 years ago
4
Allow RegionLoader to work with bed files with headers.
#27
dnbaker
closed
8 years ago
1
Exception in thread Error
#26
tinuthomas
opened
8 years ago
2
polyA/polyT/lowcomplexity region realignments for single ended reads
#25
avilella
opened
8 years ago
3
[fwrite] Remote I/O error
#24
bcantarel
opened
8 years ago
5
Excessive run time
#23
dh10
opened
8 years ago
2
Bug in BED file parsing
#22
marc-sturm
opened
8 years ago
0
Error running abra [0.96]
#21
chisqr
opened
8 years ago
4
Error while running ABRA
#20
chisqr
closed
8 years ago
6
Running ABRA on BAM files generated from the GATK pepeline
#19
chisqr
closed
8 years ago
1
Errors without BED file
#18
adammaikai
opened
8 years ago
1
New java.lang.ArrayIndexOutOfBoundsException: 44800 Issue
#17
mgfield
closed
8 years ago
1
java.lang.UnsatisfiedLinkError
#16
preciserobot
closed
8 years ago
2
Error running on customs bed file
#15
rhshah
closed
9 years ago
10
Problem finding bwa index when running ABRA
#14
mgfield
closed
9 years ago
3
does abra realign unaligned reads
#13
dwaggott
opened
9 years ago
6
java.lang.NegativeArraySizeException
#12
etwatson
closed
9 years ago
9
Requested array size exceeds VM limit
#11
joonlee3
closed
8 years ago
4
Trouble with GATK due to Cigar representation
#10
joonlee3
closed
8 years ago
2
somatic mode
#9
joonlee3
closed
9 years ago
1
Weird error ...
#8
joonlee3
closed
9 years ago
4
'align_to_contig.sam.sai' : No such file or directory
#7
dh10
opened
9 years ago
3
Exception in thread "Thread-212177" java.lang.OutOfMemoryError: PermGen space
#6
Gig77
closed
10 years ago
4
BWA error: fail to locate the index files
#5
Gig77
closed
10 years ago
5
Bug in v0.77 - Input regions not split properly
#4
mozack
closed
10 years ago
0
Read name length exceeded
#3
Gig77
closed
10 years ago
2
License?
#2
tdanford
closed
9 years ago
4
SAM Read name length exceeded
#1
jstjohn
closed
10 years ago
1